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Domain assignment for A0A1U8QWM0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A1U8QWM0
Domain Number 1 Region: 26-198
Classification Level Classification E-value
Superfamily Coronavirus RNA-binding domain 1.83e-58
Family Coronavirus RNA-binding domain 0.0000372
Further Details:      
 
Domain Number 2 Region: 265-380
Classification Level Classification E-value
Superfamily Nucleocapsid protein dimerization domain 3.05e-31
Family Coronavirus nucleocapsid protein 0.0002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A1U8QWM0
Sequence length 454
Comment (tr|A0A1U8QWM0|A0A1U8QWM0_CVMA5) Nucleoprotein {ECO:0000256|PIRNR:PIRNR003888, ECO:0000256|SAAS:SAAS00869216} KW=Complete proteome OX=11142 OS=Murine coronavirus (strain A59) (MHV-A59) (Murine hepatitis virus). GN= OC=Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus. OH=10090
Sequence
MSFVPGQENAGGRSSSVNRAGNGILKKTTWADQTERGPNNQNRGRRNQPKQTATTQPNSG
SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQK
QLLPRWYFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFA
PGTVLPQGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAAL
VLAKLGKDAGQPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQNFGGSE
MLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDS
TLPGFETIMKVLNENLNAYQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQ
RNVSRELTPEDRSLLAQILDDGVVPDGLEDDSNV
Download sequence
Identical sequences A0A1U8QWM0 A0A2D1CIK2 C0KYR5 C0KYT5 C0KYY3 C0KZ04 P03416 Q66WM6 S5YA14
gi|9629816|ref|NP_045302.1| C0KYR5_9BETC C0KYT5_9BETC C0KYY3_9BETC C0KZ04_9BETC C3VPF3_CVMA5 NCAP_CVMA5 Q66WM6_9BETC NP_045302.1.876

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