SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A1W6DZX0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A1W6DZX0
Domain Number 1 Region: 43-195
Classification Level Classification E-value
Superfamily Coronavirus RNA-binding domain 4.58e-54
Family Coronavirus RNA-binding domain 0.0000528
Further Details:      
 
Domain Number 2 Region: 264-382
Classification Level Classification E-value
Superfamily Nucleocapsid protein dimerization domain 1.35e-28
Family Coronavirus nucleocapsid protein 0.00029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A1W6DZX0
Sequence length 448
Comment (tr|A0A1W6DZX0|A0A1W6DZX0_CVHOC) Nucleoprotein {ECO:0000256|PIRNR:PIRNR003888, ECO:0000256|SAAS:SAAS00869216} OX=31631 OS=Human coronavirus OC43 (HCoV-OC43). GN= OC=Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus. OH=9606
Sequence
MSFTPGKQSSSRASSGNRSGNGILKWADQSDQFRNFQTRGRRAQPKQTATSQQPSGGNVV
PHYSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLL
PRWYFYYLGTGPHAKDQYGTDINGVYWVASNQADVNTPADIVDRDPSSDEAIPTRFPPGT
VLPQGYYIEGSGRSAPNSRSTSRTSSRTSSAGSRSRANSGNRTPTSGVTPDMADQIASLV
LAKLGKDATKPQQVTKHTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQNFGGGEM
LKLGTSDPQFPILAELAPTAGAFFFGSKLELAKVQNLSGNPDEPQKDVYELRYNGAIRFD
STLSGFETIMKVLSENLNAYQQQDGMMNMSPKPQRQRGHKNGQGENDNISVAVPKSRVQQ
NKSIELTAEDISLLKKMDEPFTEDTSEI
Download sequence
Identical sequences A0A1W6DZX0

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]