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Domain assignment for C8CAL5 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  C8CAL5
Domain Number 1 Region: 6-164
Classification Level Classification E-value
Superfamily Coronavirus RNA-binding domain 4.45e-52
Family Coronavirus RNA-binding domain 0.00022
Further Details:      
 
Domain Number 2 Region: 229-335
Classification Level Classification E-value
Superfamily Nucleocapsid protein dimerization domain 1.13e-35
Family Coronavirus nucleocapsid protein 0.0014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) C8CAL5
Sequence length 382
Comment (tr|C8CAL5|C8CAL5_9ALPC) Nucleoprotein {ECO:0000256|PIRNR:PIRNR003888, ECO:0000256|SAAS:SAAS00869216} OX=11149 OS=Transmissible gastroenteritis virus. GN=N OC=Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus.
Sequence
MASQGQRVSWGDESTKTRGRSNSRGRKSNNIPLSFFNPITLQQGSKFWNLCPRDFVPKGI
GNRDQQIGYWNRQTRYRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGA
MNKPTTLGSRGANNESKALRFDGKAPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRGRQ
QSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSKTRDTTPKNENKHTWKRT
AGKGDVTRFYGTRSSSANFGDSGLVANGSSAKHYPQLAECVPSVSSILFGSYWTSKEDGD
QIEVTFTHKYHLPKDDPKTEQFLQQINAYARPSEVAKEQRKIKSRSKSAERSEQEVVPDS
LTENYTDVFDDTQVEMIDEVTN
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Identical sequences C8CAL5
C8CAL5_9ALPC

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