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Domain assignment for Q0PL08 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Q0PL08
Domain Number 1 Region: 6-164
Classification Level Classification E-value
Superfamily Coronavirus RNA-binding domain 3.53e-51
Family Coronavirus RNA-binding domain 0.00024
Further Details:      
 
Domain Number 2 Region: 229-335
Classification Level Classification E-value
Superfamily Nucleocapsid protein dimerization domain 3.27e-36
Family Coronavirus nucleocapsid protein 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Q0PL08
Sequence length 382
Comment (tr|Q0PL08|Q0PL08_9ALPC) Nucleoprotein {ECO:0000256|PIRNR:PIRNR003888, ECO:0000256|SAAS:SAAS00869216} KW=Complete proteome; Reference proteome OX=398815 OS=PRCV ISU-1. GN=138.7 OC=Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus.
Sequence
MASQGQRVSWVDESTKTHGRSNSRGRKSNNIPLSFFNPITLQQGSKFWNLCPRDFVPKGI
GNRDQQIGYWNRQTRYRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGV
MNKPTTLGSRGANNESKALRFDGKVPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRGRQ
QSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSKTRDTTPKNENKHTWKRT
AGKGDVTRFYGARSSSANFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSKEDGD
QIEVTFTHKYHLPKDDPKTEQFLQQINAYARPSEVAKEQRKRKSRSKSAERSEQEVVPDS
LIENYTDVFDDTQVEMIDEVTN
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Identical sequences Q0PL08
Q0PL08_9ALPC

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