The results are sorted from lowest E-value to highest E-value. Strong classifications have a low E-value. Weak classifications have an E-value greater than 0.0001. Weak hits are shown in gray. Weak hits are not shown on the domain architecture.
The family level classification is conditional on the domain being a member of the specified superfamily. There is a possibility that the selected domain is a member of a sub-family for which no structure has yet been solved.
| Sequence: |
gi|9626098|ref|NP_040332.1| |
| Domain Number 1 |
Region: 218-346 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus capsid protein, N-terminal core domain |
6.83e-54 |
| Family |
Retrovirus capsid protein, N-terminal core domain |
0.000000254 |
| Further Details: |
|
| |
| Domain Number 2 |
Region: 1-103 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retroviral matrix proteins |
4.3e-44 |
| Family |
MMLV matrix protein-like |
0.00000266 |
| Further Details: |
|
| |
| Domain Number 3 |
Region: 481-526 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus zinc finger-like domains |
0.000000000000882 |
| Family |
Retrovirus zinc finger-like domains |
0.0000817 |
| Further Details: |
|
| |
| Sequence: |
gi|9626098|ref|NP_040332.1| |
| Domain Number - |
Region: 355-383 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus capsid dimerization domain-like |
0.00201 |
| Family |
Retrovirus capsid protein C-terminal domain |
0.0095 |
| Further Details: |
|
| |
The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by 
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Information Content (IC) is an information theoretic score measured in bits of how informative it is to assign a given ontological term to a domain archtecture. The higher the score the more informative it is to talk about the term given the domain architecture.
H-score (hypergeometric score) indicates the strength of assigning an ontological term to this domain architecture. Assignments with higher scores are of a better quality. Details for the methodology be found on the dcGO website.
| Molecular Function |
IC (bits) |
H-Score |
| Cellular Component |
IC (bits) |
H-Score |
| Biological Process |
IC (bits) |
H-Score |
