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Domain assignment for gi|9627214|ref|NP_056891.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|9627214|ref|NP_056891.1|
Domain Number 1 Region: 926-1268,1384-1430
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3.34e-103
Family Reverse transcriptase 0.0000094
Further Details:      
 
Domain Number 2 Region: 1557-1711
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.29e-46
Family Retroviral integrase, catalytic domain 0.0004
Further Details:      
 
Domain Number 3 Region: 272-438
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 4.32e-46
Family Retrovirus capsid protein, N-terminal core domain 0.0046
Further Details:      
 
Domain Number 4 Region: 762-896
Classification Level Classification E-value
Superfamily Acid proteases 6.33e-39
Family Retroviral protease (retropepsin) 0.00000196
Further Details:      
 
Domain Number 5 Region: 638-773
Classification Level Classification E-value
Superfamily dUTPase-like 2.49e-31
Family dUTPase-like 0.00044
Further Details:      
 
Domain Number 6 Region: 1-93
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 4.94e-31
Family Mason-Pfizer monkey virus matrix protein 0.00000138
Further Details:      
 
Domain Number 7 Region: 443-521
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.56e-23
Family Retrovirus capsid protein C-terminal domain 0.0025
Further Details:      
 
Domain Number 8 Region: 1713-1763
Classification Level Classification E-value
Superfamily DNA-binding domain of retroviral integrase 2.22e-18
Family DNA-binding domain of retroviral integrase 0.0041
Further Details:      
 
Domain Number 9 Region: 1496-1548
Classification Level Classification E-value
Superfamily N-terminal Zn binding domain of HIV integrase 1.96e-16
Family N-terminal Zn binding domain of HIV integrase 0.0029
Further Details:      
 
Domain Number 10 Region: 575-604
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000000227
Family Retrovirus zinc finger-like domains 0.00024
Further Details:      
 
Weak hits

Sequence:  gi|9627214|ref|NP_056891.1|
Domain Number - Region: 532-566
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000293
Family Retrovirus zinc finger-like domains 0.0028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|9627214|ref|NP_056891.1|
Sequence length 1771
Comment RT-IN [Mason-Pfizer monkey virus]
Sequence
MGQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVG
DCFQDYYNTFGPEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLTK
TSQNPDLDLISLDSDDEGAKSSSLQDKGLSSTKKPKRFPVLLTAQTSKDPEDPNPSEVDW
DGLEDEAAKYHNPDWPPFLTRPPPYNKATPSAPTVMAVVNPKEELKEKIAQLEEQIKLEE
LHQALISKLQKLKTGNETVTHPDTAGGLSRTPHWPGQHIPKGKCCASREKEEQIPKDIFP
VTETVDGQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTL
VRAVLSGGDHLLWKSEFFENCRDTAKRNQQAGNGWDFDMLTGSGNYSSTDAQMQYDPGLF
AQIQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYV
KQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQTVKDFLNN
KNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQGN
PIPPHQGNRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTP
EMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIV
TVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIYWVQPITCQKPSLTLWLDDKMF
TGLIDTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIK
PFVIPNLPVNLWGRDLLSQMKIMMCSPNDIVTAQMLAQGYSPGKGLGKKENGILHPIPNQ
GQSNKKGFGNFLTAAIDILAPQQCAEPITWKSDEPVWVDQWPLTNDKLAAAQQLVQEQLE
AGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLK
IIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSPTLCQKYVAT
AIHKVRHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQLKQELTAAGLHIAPEKVQLQDPY
TYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTTGDLKPLFDTLKG
DSDPNSHRSLSKEALASLEKVETAIAEQFVTHINYSLPLIFLIFNTALTPTGLFWQDNPI
MWIHLPASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSTIIQPYSKSQIDWLMQNTEM
WPIACASFVGILDNHYPPNKLIQFCKLHTFVFPQIISKTPLNNALLVFTDGSSTGMAAYT
LTDTTIKFQTNLNSAQLVELQALIAVLSAFPNQPLNIYTDSAYLAHSIPLLETVAQIKHI
SETAKLFLQCQQLIYNRSIPFYIGHVRAHSGLPGPIAQGNQRADLATKIVASNINTNLES
AQNAHTLHHLNAQTLRLMFNIPREQARQIVKQCPICVTYLPVPHLGVNPRGLFPNMIWQM
DVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQIKTDNG
PGYTSKNFQEFCSTLQIKHITGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYPRKGTPR
NILNHALFILNFLNLDDQNKSAADRFWHNNPKKQFAMVKWKDPLDNTWHGPDPVLIWGRG
SVCVYSQTYDAARWLPERLVRQVSNNNQSRE
Download sequence
Identical sequences P07572
gi|9627214|ref|NP_056891.1| NP_056891.1.91410 O56224_MPMV

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