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Domain assignment for gi|9630633|ref|NP_056762.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|9630633|ref|NP_056762.1|
Domain Number 1 Region: 1170-1583
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 5e-95
Family Reverse transcriptase 0.00066
Further Details:      
 
Weak hits

Sequence:  gi|9630633|ref|NP_056762.1|
Domain Number - Region: 753-794
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000387
Family Retrovirus zinc finger-like domains 0.0059
Further Details:      
 
Domain Number - Region: 977-1072
Classification Level Classification E-value
Superfamily Acid proteases 0.000996
Family Retroviral protease (retropepsin) 0.029
Further Details:      
 
Domain Number - Region: 847-882
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.00658
Family FYVE, a phosphatidylinositol-3-phosphate binding domain 0.038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|9630633|ref|NP_056762.1|
Sequence length 1675
Comment hypothetical protein [Rice tungro bacilliform virus]
Sequence
MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKL
YEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKNVKNQGKLYYHIGMMAI
GVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDLSH
LKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKDIVEQISSQGIIMVAPMEI
DSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLRFSNYKQTRMHDPTENNSDE
DEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQAMIAKLEAKMKESSKMAIVE
DNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIETEEITEWENPNQVLHREIRAY
KSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIEKAKSIEEIAKSSTSSEIRPTKR
PKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERIGSSYKKNFYPSRSEILNLDNVPP
QFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRITGLVLYLVQDWISKNQAAYNDIKS
RGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQRELEALNCEDPTKIQPFMAEYLKKAS
EAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDGNSYEAGIGIAVSYISTWMRAKCIKET
EAKTQKKASLAFCRSIYTIGDYKKRKILKRVTNYNKNRRKNYVRRPSIKKKCRCYICQDE
NHLANRCPRRYTNQARASLIDGLDEDIVSIASDDEDIENFLEIIELDEFIAHSSQEHEHT
WEIGGKKDKVCEICSYFTDYNKTVSCKTCETQYCKTCSDQLALEVTEVKKPTKEETMIDD
LKLNVKNLEFRVTILEHKVEMQNLQDKFETMQIRNKSEITEIPTTSLAMRANESNYIKTS
INKTAGCYVETKISFNNENRIITALIDSGSTHNIICPTLIPASWINNTHREIIMFAVDNS
KYNLNQELIDDIKLQFQEVDETFGIKYKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHK
DYITIQKTTGIYPTARHELKSEFARKHGGRPPLFSNIPETYNKIPHLHSYQPQPILGYKN
EIGNQSLITMVKELEALGFIGDDITKNRTTWVCDFKIINPDINITCATIPYTPADKEVFE
KQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIP
HKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPC
AFQRFMQESFGDLKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFL
KEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLV
GPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVL
VCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDC
EAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKC
LQNPDSTESYSIDSSESIPLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA
Download sequence
Identical sequences P27502
gi|9630633|ref|NP_056762.1| NP_056762.1.82610 POL_RTBVP

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