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Domain assignment for CJA12482 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA12482
Domain Number 1 Region: 5-402
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 8.12e-26
Family Reverse transcriptase 0.023
Further Details:      
 
Weak hits

Sequence:  CJA12482
Domain Number - Region: 458-530
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.000759
Family Retroviral integrase, catalytic domain 0.071
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA12482   Protein: JA34886   Gene: WBGene00131686
Sequence length 569
Comment JA34886 WBGene00131686 status:Predicted
Sequence
TGRAFYFPHQTVWKDSNTTKIRMVFDGSSHVTGELSLNQCVHAGPSILKEILGILLRART
SKFYMTSDIEKAFHQIRMQEDDRDCTRFLWFRNIKKGLVPGNIVTYRFKRIPFGLTCSPF
LLAAAILAYMDKYPASINEHINRNLYVDNILFTTNTEEELKQMYTDSKKATGTWGMRLRE
YQTNSEKVTEFIRAEDRAPDKPNKILGHIFNSKKDTVAISIPTPPRRGTDQKRSPLISSK
NLRPNRSSSTVRLKSFLQSLWSTQIKWRQNIPKVTTQIWESIKKDFHHTEYTMPRQLTTR
YDYSKTQLILFSDASKNNYGITAYIRFEFPSEPASCALLLAKSRVKPLKEGERMTIPRLE
LTSLETSTNCAVFLTQQLHNLIPFESVELFCDSIIALGWTTTHKTLKCVVKHRVDKIKQN
CKIIEEQEHQTQPASCPNRSQPSRFHNKTQKHHGPNIGLDYFGPLTYLGASGPQKCWILI
CTCLVTRNIHLELVSLSNNGTLGFMLAMRRFFSRRGTPQTVILDIAKTFKLGEKIFNGDI
RRLAEEDNAIDTFLDNHPMDWKFITPLSP
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Identical sequences CJA12482 281687.CJA12482

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