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Domain assignment for CJA05078 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA05078
Domain Number 1 Region: 377-521
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 9.01e-43
Family Reverse transcriptase 0.0011
Further Details:      
 
Domain Number 2 Region: 82-115
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000593
Family Retrovirus zinc finger-like domains 0.0049
Further Details:      
 
Weak hits

Sequence:  CJA05078
Domain Number - Region: 143-240
Classification Level Classification E-value
Superfamily Acid proteases 0.000325
Family Retroviral protease (retropepsin) 0.026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA05078   Protein: JA28256   Gene: WBGene00124282
Sequence length 528
Comment JA28256 WBGene00124282 status:Predicted
Sequence
MDEFVETMDGVLELGVEDRATGAAAATIGESTTGTAEEELLREMDMHRMAEENVERLKKA
LRRREKWPRETRATSSIALRSREGKPHREGGFFNPNRKCFRCGGMGHMSRQCTSKPVQNV
KAREEDAVKSVGAEIVEIVEMLGQRRRIVIDSGAVVSVMSTGAWNSLKKGCPSWEKEVEM
LEKPSFTLVDASKMNMPVKEQVKIDIGVRGRRALVVFQLVENEADIFLLGTNAFGSVGVE
LKWKAERSVALAAEKLRVPPQSCAQIMVKVEADLGNNVLLESKEEWVPTSLCSKNENGNL
TVLVSNWKDEPLLIKKNHVIGVVTREWELLESKRNKAVNMLDLKRKVPLKGNRRNDEVWR
ILVENGEVPDGNIRRIASEFIDVFAIEDSELTQTDKVQCEIELEKENPIRQKCRPVPLAL
QEKVKVMLEDMETRKVIRKCRSPWASPVVLVKKKDGSIRMCVDYRKLNTVIKLNAHPLPH
IESTLQALGEKKWFTTLDLMAGYWQIPMEKQSKEKTAFVVLMSSTSLK
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Identical sequences CJA05078 281687.CJA05078

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