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Domain assignment for CRE18249 from Caenorhabditis remanei

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CRE18249
Domain Number 1 Region: 300-399
Classification Level Classification E-value
Superfamily Acid proteases 0.0000253
Family Retroviral protease (retropepsin) 0.022
Further Details:      
 
Weak hits

Sequence:  CRE18249
Domain Number - Region: 240-274
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000314
Family Retrovirus zinc finger-like domains 0.0058
Further Details:      
 
Domain Number - Region: 54-165
Classification Level Classification E-value
Superfamily BAR/IMD domain-like 0.0767
Family IMD domain 0.072
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CRE18249   Protein: RP43398   Gene: WBGene00072432
Sequence length 685
Comment RP43398 WBGene00072432 status:Predicted
Sequence
MSFSTERTKKRSSSVTSFEKSWAVQMNEVRLKERRKLVRGFTDFLESSGRMESDMYEALK
AACKGNERQSEVLVEPVKKYCQELRERFEELGGERWPLEIIGVMRENGVETVEELRELCE
KGVEMVPGGIVENANKAQDELALLQDAWNEERETLFRELNKLKEEKRLAEEAVSKYKKTL
KEEREASSELRGLLRKQESEPKKAGQARDTKEVPVPSRLEVVRKWSPRDSDDEFSMHGRR
GDRKTVGERRDSGAKIKCFTCGGIGHGSWQCVSKRVDKVQIQEGTVKNAGVETVEMVEML
GQRRRVVIDSGAVVSVISTTAYEKLKEGCRDWEKEVEVFGKPTFTVLNASNSKMRVREQI
KIPMVVRGRKVRVVFQLVDNWVERILIGTNAFESIGVELKWKDPYGLVNAEENSAEVQFI
GGEKKLERPGEKLRKVPTEVSGIQCKSVAVRGERGRRASTGDVGEFKSEGEEKERKKVKI
RASVAVIGPRLEARGPGVLEYRNKTITGWTQKFDWGEVKKAVVLVEYTDKEDENSKRVEF
VKSVAKEVEKVWMMPRSLQCELGDVDKVAKQWKEWLKTSANVEVVDPLMPVGNHKTPLIL
EKWHRKSLDGLQKYLHNALPSHSVRCQWEKNTDRRPLSGLKKDLGKGCPIAERRGKWLRR
SSTFSKPHGITEVKGNEYSRGNRKT
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Identical sequences E3NFH8
31234.CRE18249 CRE18249 XP_003092844.1.11157

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