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Domain assignment for CRE24401 from Caenorhabditis remanei

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CRE24401
Domain Number 1 Region: 388-608
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.82e-61
Family Reverse transcriptase 0.004
Further Details:      
 
Domain Number 2 Region: 788-942
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.41e-41
Family Retroviral integrase, catalytic domain 0.004
Further Details:      
 
Weak hits

Sequence:  CRE24401
Domain Number - Region: 240-274
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000502
Family Retrovirus zinc finger-like domains 0.0064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CRE24401   Protein: RP26693   Gene: WBGene00083014
Sequence length 1100
Comment RP26693 WBGene00083014 status:Predicted
Sequence
MSFSVERTKKGSSSVTSSEKSWAVQMNEVRLKERRKLVKGFTDFLESSGRMESDMYEALK
AACQGNERQSEVLIEPVKKYCHELRERFEELGGERWPLEIIGVMRENGVETVEELRELCE
KGVEMVPGGIVENGNKAQDELALLQDAWNEERATLFRELNKLKEEKRLAEEAVSKYKKTL
KGEREASSELRGLLRKQESEPKKAGQVRDTKEVPVPSRLEVVRKWSPRDSDDEFSMHGRR
GDRKTVGERRDSGAKMKCFTCGGIGHGSWQCVSKRVDKVQIQEGTVKNAGVETVEMVEML
GQRRRVVIDSGAVVSVISTTAYERLKAGCRDWEKEVEVFGKPTFTVLNASNSKMRVRGQI
EIPMVVRGRKSAPGISPIMILADGLEEMEKCSFLMEEIKFLGFIINKQGRRPDPEKVRHI
KNMPEPTNVSQVKSFLGLIQFYGQFVKQLFRLRQPLDNLTAKDTDFKWNRECQKSFDTIK
EILQSDLLLTHYNPNLPIIVAADASQYGIGATISHRCPDGTEKTIYHISKTLSKTQRNYS
QIEKEGFGLITAVTKFHKFIHGRKFTLRTDHKPLLTIFGGKKGVPVYTANRLQRWATILL
NYDFDIEYINTKDFGQVDALSRLIDEQNAEKAPEDFVIAQVELDPVDQLPQNLSFLPITA
KTISFQTGKDTLLTDVLNSLKSGKWPKSEKGTEMWNMCNRKDEFSIVNDCIVLGERVVIP
TVLRQKVLKTLHRAHPGIVRMKMLARSYVYWPGIDKDIEKLVKSCDECASAAKNPVKNLL
YSWPIPKKPFERVHVDFAGPVDGMYYLVFVDSLSKWPEVYATTSTTTAATIKILAKVFGQ
FGNPETLVTDNGPQFTSQTFQEFTASNGITHVRTPPYHPQSNGQAERFVDTLKRALCKLR
GEGNTETALQTFLQVYRSTPCASVPNNQSPAEAFIGRKMRTVLNLLLPHKPTPSLKRNLA
METQFNLHHGARDRSFEINDQVYVIDRRSPNSSQWVSGVIERKLGQTVYKVRVGSQRWTR
HANQLRQRTSPPSHYDWSDFLEIEDPAEEMPKPDKADTTTIPVLSPSTSIPPTTPVPLRR
STRNIKPVQPFQIQPKQKRY
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Identical sequences E3MFT3
CRE24401 XP_003104937.1.11157 31234.CRE24401

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