SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|340789560|ref|YP_004755025.1| from Collimonas fungivorans Ter331

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|340789560|ref|YP_004755025.1|
Domain Number 1 Region: 39-355
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 1.8e-67
Family Phosphate binding protein-like 0.00017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|340789560|ref|YP_004755025.1|
Sequence length 358
Comment ABC transporter periplasmic spermidine putrescine-binding protein potD [Collimonas fungivorans Ter331]
Sequence
MFVLVIKSRGDVMKSIFKPVFTSAVLALAAVGMAQAAALTVVNFGGANGAAQKVAYIDPY
AKASGDKITVVEFNGELAKVKAMVEAKKVSWDAVEVDAGDIGRACEEGLLEKIDFSKIGN
KADFNPAAIHECGVGAFVWSTVLAYDADKLKSAPKSWADFWDTKKFPGKRALKKGAQNNL
EFALMADGVAPKDVYKLLGSKAGVDRAFKKLDELKPSIQWWEAGAQPPQFLVAGDVVMSS
AFNGRIDAAQREGKNLKVSWTGSIYTLDFWVIPKGSPNKADAEKFVAFASKPESQKAYAS
NISYGPVNNQALKLLDPKVLANLPTSPTNAKDALALSQSFWTDHGEELEQRFTAWAAK
Download sequence
Identical sequences G0AEJ4
gi|340789560|ref|YP_004755025.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]