SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for jgi|PhycaF7|77436|fgenesh1_pg.C_scaffold_6000110 from Phytophthora capsici

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|PhycaF7|77436|fgenesh1_pg.C_scaffold_6000110
Domain Number 1 Region: 62-234
Classification Level Classification E-value
Superfamily ClpP/crotonase 1.53e-36
Family Biotin dependent carboxylase carboxyltransferase domain 0.0000215
Further Details:      
 
Weak hits

Sequence:  jgi|PhycaF7|77436|fgenesh1_pg.C_scaffold_6000110
Domain Number - Region: 3-46
Classification Level Classification E-value
Superfamily ClpP/crotonase 0.000236
Family Biotin dependent carboxylase carboxyltransferase domain 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|PhycaF7|77436|fgenesh1_pg.C_scaffold_6000110
Sequence length 249
Sequence
MDKEVYTSNDQLGGVKIMHTNGVTHLTAKNHLSGIYLILEWLSFVPAVRRSPLPIRDLTG
VDAIERTVDFCAKDKSTQYDPRALLAGKVDKATGRSARRLMAGPRALLLAVVFMVVSLSV
WIIPADPAFPASQENLMQQAGQVWFPDSAHKTSTAIKDFKGEDLPLFILANWRGFSGGQR
DMFDEVLKFGAAIVDGFANYEQPVFVYISPFADQRGGAWAVVDRIINEGIMEISSTLSST
NVNVNGFCV
Download sequence
Identical sequences jgi|PhycaF7|77436|fgenesh1_pg.C_scaffold_6000110

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]