SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|427710330|ref|YP_007052707.1| from Nostoc sp. PCC 7107

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|427710330|ref|YP_007052707.1|
Domain Number 1 Region: 287-598
Classification Level Classification E-value
Superfamily WD40 repeat-like 4.4e-75
Family WD40-repeat 0.0000279
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|427710330|ref|YP_007052707.1|
Sequence length 600
Comment WD-40 repeat-containing protein [Nostoc sp. PCC 7107]
Sequence
MQHCAVGMQMDWISLLKAQQADFLQRVKKPKTYDLSLLDSQVKGCHSEIMAFWGDSLAKI
QEFSRQQSEILAKNPPPIPPEYPEPPDWVIPYPKHFQQQAEDYILREQIVEQVMAERLGK
LVKKLPQDTIQNMVLDDEGNLRGESKFTYFLADNPKQSVLVYAADGESFNGIKKDKIRWS
VTQDDLLNHQVLIFLCLFYPSTGKLGYEKHAVIAGFLPSYQLEFTETKSYVTPSNLLYAG
GLSWYLESLTAKKTTKKDILPTVEEQAIAENIQIVSSDHPQKEIIGDWECWQTLKGHTKG
IHCLDFTSRCHNGNVMPILASGSRGETRLWDLSKGELIDTLSESPWIASRLVDDVNSISF
SPDGHTLVSVGADSTVKIWHVGAPELIDILHKHNGVVRCTAFTPDGRMVATGGDDRKVLF
WDLMYRQVAIALSLDDTAAHSLALSPDGKTLVTGSYRKIKVWKTAQLSECNALQEIEPLH
SLTGHSHIVRSLTISADGEWLISGSWDQTIKIWHLETGRLIRTLKGHTDRVYAIALSPDE
QIIASGSADKTIKLWHFNTGELLGTFTGHSNIVTALAFTTSGDMLVSASLDKTIKIWQRS
Download sequence
Identical sequences K9QL61
gi|427710330|ref|YP_007052707.1| WP_015115745.1.60169

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]