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Domain assignment for Solyc02g065350.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc02g065350.2.1
Domain Number 1 Region: 223-315
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 9.42e-23
Family B3 DNA binding domain 0.0061
Further Details:      
 
Domain Number 2 Region: 19-114
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 4.12e-19
Family B3 DNA binding domain 0.0038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc02g065350.2.1
Sequence length 331
Comment genomic_reference:SL2.40ch02 gene_region:31128527-31130662 transcript_region:SL2.40ch02:31128527..31130662+ go_terms:GO:0003700,GO:0016564 functional_description:"B3 domain-containing transcription factor VRN1 (AHRD V1 *-** VRN1_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MVNKFRRQIGKVSSISYTSQPKFCKIIFSPHELCRLRIPKGFASRYCKNILNPVYLEVPN
GEVWEVELEHSEGHIWLAEGWKDFSDYYSIRRGNFFMFGYNARSHFNVTIFDFSAAEIEY
PPAEIESDDSIDISDVVEYSSEYLSHDPLVKERKRIRQEGEEENDIPVERQTIVIDEEES
QLNVVSLVISEDCEEQQSNIVTSKRKEERDEGTADNYQRAKAFKSKNPFIVSFMHPSYVS
KPHALYIPLKFARMYLMRNSGNLVLRVPGKGSWSVKCVMLRKDAKVTCGWKAFVLDNKLK
YGDVCVFEVINDTKLSLIDVTIFPGISDGTN
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Identical sequences K4B6W9
Solyc02g065350.2.1 XP_004233419.1.44838 Sopim02g065350.0.1 Solyc02g065350.2.1

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