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Domain assignment for Solyc06g065910.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc06g065910.2.1
Domain Number 1 Region: 33-153
Classification Level Classification E-value
Superfamily TPR-like 1e-26
Family Tetratricopeptide repeat (TPR) 0.0019
Further Details:      
 
Domain Number 2 Region: 230-322
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.00000000000000104
Family PB1 domain 0.0068
Further Details:      
 
Domain Number 3 Region: 396-537
Classification Level Classification E-value
Superfamily TPR-like 0.00000335
Family Tetratricopeptide repeat (TPR) 0.026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc06g065910.2.1
Sequence length 685
Comment genomic_reference:SL2.40ch06 gene_region:37697428-37699660 transcript_region:SL2.40ch06:37697428..37699660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT4_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "
Sequence
MGKPTGKKKSNVKSKSNDGNVKHKSKAFDEDTAVFIKMSKELKEEGNRFFQKRDHEGAML
KYEKALKLLPRNHIDVAYLHSNLASCYMQMGRSEFPKAINECNLALEVAPKYSKALLKRA
KCYESLNRLDLALRDVNHVLSIEPNNLTALEIADKVKKEIEEILKVENKKLVLPLPVSAN
VVKDNMKKEKKNNKFDRKRIVEIKETKIDGVEEKKAEDKVVVEEKRTVQGEKTMIRTVKL
VLGEDIRWAQLPVGCSFRLVRDIVLDRFPNLKGALIKYKDQEGDLVTITTTDELRLAESS
VGLQGSLRLYIKEVSPDKEPMYLRVEEDEKSSICRSNIVKKDGELNKGPICPENWFVQFA
RLFKNHVGVDCDSYLDLHETGMKLYSEAMEDTVTNEEAEELFDIASAQFQEMAALSLFNW
GNVHMSRARKEVFFTEEGSGETVSEQVKSAYEWAEKEYETAEMRYEEALRVKPDFYESLL
ALGQQQFEQAKLSWYYLIGSKVELETGTCAEILELYNKAEDSIDRGMEMWEEMEEQHLNG
LSKYEEYKSQLYKRGLEGILKDKSSEETKEQTENMRSQIYLLWGTMLYERSVVEFKIGLP
TWEECLDVAVEKFELAGASHSDIAVMIKNHCSNETALEGFKVDEIVQAWSEMYDTNRWQT
GVPTFRLEPLFRRRVSSLHSILENI
Download sequence
Identical sequences K4C7L9
Solyc06g065910.2.1 Solyc06g065910.2.1 Sopim06g065910.0.1 XP_004241786.1.44838

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