SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for Solyc06g083600.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc06g083600.1.1
Domain Number 1 Region: 482-575
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 8.83e-23
Family B3 DNA binding domain 0.0009
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc06g083600.1.1
Sequence length 620
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45247406-45250350 transcript_region:SL2.40ch06:45247406..45250350+ go_terms:GO:0016563,GO:0003700 functional_description:"B3 domain-containing transcription factor ABI3 (AHRD V1 **-* ABI3_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MERELHGVDNENENTNLVDIQMLQQQQQHDCTDFDPMDETDIWLNENFSTDFTSLQDFPC
MSSSSSTSFSPPTESDPSSGVVLKSDADEQDFDKKIDTIGDQECLNVMDNVGYIDVNEFL
DPMISFLHNENPQEQQQQQQQQQLLPQEDDDQGFSFFQGDSELALMFFEWLKQNRDYICA
EDMRSIKLKRSTIESASKRLGSTKEGKKQLLRLILDWVEQHRLQKKQMREAEAINQQALQ
NSVPYNFDPNACFYPPQWIPNAPFPDSSTPIMTGPIQGYTSDPYSNGGLFPPPYSQTMSG
GATSPASAEYQPMDTSQSWSPSQFTMATTSQYNPFPENDSTNNVAMPDQSLFGAQYDPYQ
LFDGNGEIVPRLGSCATKEARKNRMARQRRLRPHHYRHQARNPRQITNEQSVMMAGEINN
CVMTQANNPGNWVCWPSPPMAMVSQSLPPERPAMQSQNQQKQVSTSADKKQAFKSEKNLK
FLLQKVLKQSDVNNLGRIVLPKKEAERHLPHLETRDGISIAMEDIGTSRVWNMKYRFWPN
NKSRMYLLENTGDFVKANGLQEGDFIVIYADMKCGKYLIRGVKVRQNGPKSEGKKQMKKN
PRKLSSAAAISSSPVAQAVR
Download sequence
Identical sequences K4CAL5
XP_004242390.1.44838 Solyc06g083600.1.1 Sopim06g083600.0.1 Solyc06g083600.1.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]