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Domain assignment for Solyc08g006220.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc08g006220.2.1
Domain Number 1 Region: 5-98
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.96e-19
Family B3 DNA binding domain 0.0014
Further Details:      
 
Domain Number 2 Region: 148-239
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.08e-18
Family B3 DNA binding domain 0.0048
Further Details:      
 
Weak hits

Sequence:  Solyc08g006220.2.1
Domain Number - Region: 90-123
Classification Level Classification E-value
Superfamily Non-globular alpha+beta subunits of globular proteins 0.085
Family Phycoerythrin 545 alpha-subunits 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc08g006220.2.1
Sequence length 246
Comment genomic_reference:SL2.40ch08 gene_region:912609-915803 transcript_region:SL2.40ch08:912609..915803+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MKVASKKPRFFKPIQPGYKHCIKIPIGFLKYLKGLNHIKQAILRSRGKKWLVKVTGWRLE
EGWKKFAKENDLQLGDLLIFKHEGDMEFEVSIFDSSHCDREYAEYLQEEEGNYVDATSKK
VEKDLRHKTSDMTTPISQTPASTSADADPHFISTIRRYTFTKAILYFPMRFVKSNGLMSR
SEMILVDEKQRSWSVLLGQMEHHFGIKRGWPQFRKANGLQEGDTYKFELTNNGTIPIIHM
SKYSGN
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Identical sequences K4CIB1
Solyc08g006220.2.1 Sopim08g006220.0.1 Solyc08g006220.2.1

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