SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for Solyc08g013700.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc08g013700.1.1
Domain Number 1 Region: 52-161
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 9.29e-32
Family B3 DNA binding domain 0.0000129
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc08g013700.1.1
Sequence length 294
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3068478-3069362 transcript_region:SL2.40ch08:3068478..3069362+ go_terms:GO:0003700 functional_description:"Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MNLFNSTMIHDEASDSASCYYSQQLKRPSSSTTTELMLMDSSSTCDALVEREHMFDKVVT
PSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVM
TKGWSRFVKEKKLDAGDVVSFQRGAGELSKHRLFIDWRRRPHHENGNNQFMLPHQFSDGR
IFPLQSYPTTFSRNYYNNPPHSYYMYGIGNSSASTPYYSFNNNTSVMVNASHFDHNLMKS
TSVEEPRVFNSVPVVQGKVAAKRFRLFGVNMDYPTPSEESSEKGKSSMSFDLDI
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Identical sequences K4CJ05
Solyc08g013700.1.1 XP_004244810.1.44838 Solyc08g013700.1.1 Sopim08g013700.0.1

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