SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for Solyc11g069190.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc11g069190.1.1
Domain Number 1 Region: 168-292
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.31e-43
Family B3 DNA binding domain 0.0037
Further Details:      
 
Domain Number 2 Region: 676-762
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.0000000000412
Family PB1 domain 0.026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc11g069190.1.1
Sequence length 811
Comment evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50901128-50909553 transcript_region:SL2.40ch11:50901128..50909553- go_terms:GO:0003700 functional_description:"Auxin response factor 4 (AHRD V1 **** Q2LAI9_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3 "
Sequence
MEIDLNHALVSEVEKNVCCNEECDKGGGGGCVNCSLYTSTTSSCSSNVSSSSSLALTSIY
KELWHACAGPLTSLPKKGNVVVYFPQGHMEEAVSAFPFSPVKIDLPTFGLQPQIFCRVED
VQLLANKENDEVYTQLTLLPLPESMAISLEGKEHEDSGTDEEGNGVNPGKSASHMFCKTL
TASDTTTHGGFSVPRRAAEDCFPPLDYKEQRPSQELIAKDLHGVEWKFRHIYRGQPRRHL
LTTGWSIFVSQKNLVSGDAVLFLRGEGGNLRLGIRRAARPRNGLPESIIKSQYSGPDVLS
SVATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINSRIPVGTRFKMKFDLDDSPERRY
SGVVTGISDMDPFRWPNSKWRCLMVRWDEDIMSNHQERVSPWEIDSSVSLPPLSIQSSPR
LKKLRTSQQAPSVLDSHFAGGSALLDFEESIRSSKVLQGQENLGLISPPYGCDKPVRPLD
FELQRVARHNLMPNGVENIIVGDFVKTQPPTTYTGFLESNRFPKVLQGQEICSLRSLTGK
GDVNFGAWGKPEFGCNVFGTYQRPRANFYPLASEGARNVFLPYNAMYRAGQDPVVPSYST
NFQRENPTLNQNSIQNVVRREEVGMPKFVNEQRPPEMSKVSIPENHFKNENDDSFNAQAP
CKLFGFSLTKEPSTPSSQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYDDLLVELERLFNM
EDLLRDPNKGWRILYTDSENDMMVVGDDPWHEFCEVVSKIHIYTQEEVEKMTIEGISDDT
QSCLEEAPAIMDVSKSSSVGQPDSSPTVIRI
Download sequence
Identical sequences Q2LAI9
Solyc11g069190.1.1 Solyc11g069190.1.1 Sopim11g069190.0.1 NP_001233771.1.44838

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]