SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for Solyc03g042510.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc03g042510.1.1
Domain Number 1 Region: 13-110
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.29e-19
Family B3 DNA binding domain 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc03g042510.1.1
Sequence length 193
Comment evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10874729-10875422 transcript_region:SL2.40ch03:10874729..10875422+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g49475 (AHRD V1 *-*- Y1475_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MANEFHGSSLRSSSPNNPKFIQILTSLDELRRLRIPVVFAKRHCENMLNPVFLEAPHGKA
WEVEVENSQGQIWLAKGWSDFCDYYSIRVKSVLMFTYNPRCQFSVAIYDQSKTEIEYPID
QDIESDEQEEDILFSQANANIIEEDILILQSNANVIEEDIPILQSNANVIEDEEEHIPVN
CPQTNANVIEQHK
Download sequence
Identical sequences K4BFX2
Sopim00g011550.0.1 Sopim03g042510.0.1 Solyc00g011550.1.1 Solyc03g042510.1.1 Solyc00g011550.1.1 Solyc03g042510.1.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]