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Domain assignment for Solyc04g081240.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc04g081240.2.1
Domain Number 1 Region: 134-276
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 3.4e-47
Family B3 DNA binding domain 0.004
Further Details:      
 
Domain Number 2 Region: 836-896
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.00000000981
Family PB1 domain 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc04g081240.2.1
Sequence length 930
Comment genomic_reference:SL2.40ch04 gene_region:62818343-62823877 transcript_region:SL2.40ch04:62818343..62823877- go_terms:GO:0005515,GO:0010843 functional_description:"Auxin response factor 5 (AHRD V1 ***- D9IVB5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "
Sequence
MGSVEEKNKPGSLVSGAHTLLEEMKLLKEMQDHTGGGRKLISSELWHACAGPLVTLPQVG
SLVYYFPQGHSEQVAVSTNRTATSQIPNYPNLASQLLCQVHNVTLHADKETDEIYAQMSL
QPVNSEKDVFPIPDFGLKPNKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSM
QPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFIRDEKSQ
LLLGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSTFTIFYNPRACPSEFVIPL
AKYRKSIYNTQLSVGMRFGMMFETEESGKRRYMGTISGISDLDPLRWPSSKWRCLQVEWD
EPGCGDKQNRVSPWEVETPESLFIFPSLTAGLKRPYQSTFLGAQTEWDSLMQHRPFMRVP
ENVYGDLQSSSISNLWSEQLMKMLIRPPPGLTGLQCGVPTVQDIKVALPQEARNVVQPAG
NQKPELITVEATPAQSETNSEVVLNQPVGVVNSISSQQATLQAKSKPPEKVETDIIGKNS
EPRKETSNSSVKLDQFQCNEDKVAIKPASPHDLPTDASVTASHHNSFSQLQASPWLIPHN
PQIDSAASNNILQCPTNNEWNMSSLQSAAGLLKYPVSTSTLTKHDNSFMLPDTIGHGLAP
IGQDLWDHQLNDVKCFSQTNLQVPLDITNMQFLPDSYGFKDLSEESHNQSDIYSCLNFDS
NSGSTVIDNSVSSTVLDEFCNLKHTDFQNPSDFLLGNISSSQDVQSQITSASLADSQNFS
VQEFADNSGGASSSNVNFDECNLLQNSSWQQVAPRVRTYTKIQKTGSVGRSIDVSGFKNY
EELRSEIERMFGLEGLLNDTRGSSWKLVYVDFENDVLLVGDDPWEEFVGCVRCIRILSPT
EVQQMGEEGMQLLNSAGLQSINGSTSEFPN
Download sequence
Identical sequences K4BVK3
Solyc04g081240.2.1 Solyc04g081240.2.1 Sopim04g081240.0.1

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