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Domain assignment for Solyc05g047460.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc05g047460.2.1
Domain Number 1 Region: 121-259
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 6.15e-41
Family B3 DNA binding domain 0.0052
Further Details:      
 
Domain Number 2 Region: 1003-1063
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.00000265
Family PB1 domain 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc05g047460.2.1
Sequence length 1097
Comment genomic_reference:SL2.40ch05 gene_region:58050744-58056799 transcript_region:SL2.40ch05:58050744..58056799- go_terms:GO:0046983 functional_description:"Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "
Sequence
MKTPGNGAGGGNVNPAEGEKKNLNPELWQACAGPLVNLPVAGTHVVYFPQGHSEQVAASI
KKDVEAQIPNYPNLPAKLICLLHNVTLHADPETDEVYAQMTLQPVPSFDKEALLRSDLSM
KANKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSLQPPAQELVARDLHDNIW
TFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQFLLGIRKANRQPTNLSS
SVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYSSQISLGMR
FRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERINRVSIWEIE
PITAPFLICSSPFFSSKRPRQPGMPDGDYSDMDGMFKRTMPWLGDDFGMADPQGLPGLSL
IQWMNMQKNPSLANPMIPNYMNSLSGSALQNLAGADLSRQLGMAAPQFQQQQQMQHNLQF
NNAHRPNQQLDQLQKLPAAALNSLDSIMQSQQQLSDVSQQPRQNLTTQSLPTTQVHTQHI
QAQSLGQSQNVLPPQQSVQNQNQLQRNLPQSLSQQHPQQQILGQTQQQSFMSSQAPDPVN
QQQHFSDNQAQLQMLQKLHQQQKSLLAQQSGLQQPSQLGSIQDHQKQLMDASQNFSRSLA
TNQMLDASQTTSTSLPHSQVVQQQMTRINSPSNLRFSQPTQQPKLQQQQSGNLSDLSGPV
NYPLPRTSYQLSANGSNLTGTAGGGQSVVIDDVPSWSTSVSTNNCHSVVQPNMNGRITGA
RDEMTHCSGPLEVMSANNNLQPKSDVKPSVNVVSKSQNHGFLAPQTLNTSGIQFDYLDSS
SSATSACLSQNDVQLQQTATDPLSGSSQPLIFRDSPDGGEVQGDPRNNVAFGAANMENNQ
LGLPMIPDPLITKSSMGSRKDFSDNLSSGGGMLSSYENPKEAQPELLASMASDYVTFNSI
DSTINDGSFMDRGAWEPPPQLPRLRTYTKVYKRGAVGRSIDIARYSGYEELKLDLARRFG
IEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVSCVRCIKILSPQEVQQMSLDGDFG
GSVLQNQDCSSSDAGDV
Download sequence
Identical sequences K4C0Y0
Solyc05g047460.2.1 XP_010321285.1.44838 Solyc05g047460.2.1

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