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Domain assignment for Solyc07g042260.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc07g042260.2.1
Domain Number 1 Region: 116-255
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 8.76e-43
Family B3 DNA binding domain 0.0048
Further Details:      
 
Domain Number 2 Region: 1012-1089
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.00000000177
Family PB1 domain 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc07g042260.2.1
Sequence length 1137
Comment genomic_reference:SL2.40ch07 gene_region:52687405-52694764 transcript_region:SL2.40ch07:52687405..52694764- go_terms:GO:0046983 functional_description:"Auxin response factor 1 (AHRD V1 *-*- Q6L8U3_CUCSA); contains Interpro domain(s) IPR010525 Auxin response factor "
Sequence
MKAPSNGYLPNSGEGERKLMNSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKE
TDGIPSYPNLPSKLICMLHNVTLHADTETDEVYAQMTLQPVNKYDQEALLLSEMGLKQNR
QPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYAMQPPAQELMARDLHDQTWTFRH
IYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIRDEKSQLLLGIKRTNRQQPALSSSVIS
SDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMF
ETEESGVRRYMGTITGVSDLDPIRWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTP
FYICPPPFFRPKFPKQPSFPGDESDIENVLKRGMPWINDELGLKDAQNSIFPGLSLVQWM
SMQQNNHVPVAQSGLPSVLHSNIGSDDHSKLLNFQSPALATPGLQFNKPNQLNQPFGQIQ
QPPLAWTQEQQQSLQSPVSAQQQQQQQHTLQQQQQQQQHTLQQQQQQRHTLQQQQQQQTL
QQQQQQQQQQHTLQQQQQQQHTLQHQQQHTLQQPQQHMLQQQPQFHQQAQQQLQQQQRPS
QQQQLTGNSSPVNRCVSPNQIPNQTFPQAAVYGQLQQQQVLSASTQSQQNVPVSRNSFPS
TSLAQDFQFQQQMEQQSNLLQKSQQQQTIPQQAPLQLLQQSLMQRSQVQPSSQQSLTEQQ
LQLQLLNKLQQQQQQQQAQLLSPVSSTLEPRMPQQQQNRQPQELQFAHQQLSSNIVTTVT
HLQSTHHAFNQLQNHHKSPITIKALSGGTEGDAPSCSTSPSTNNFQVSPPNFLTRNQGQA
ILVDESVVDPSQEQNKSECRIKHELVFSKGSELSKYKGNNTENLEAASSTTSYGLDSSGF
NFSLPALCVDGDVQSHSRNILPSAANNIDGLNPDALLSRDYDSGKDIQNLFSPFGNAPRD
IETELSDAGINSQQFGVPNMSYKPRCANDLAVNDNGILNNNAWTNQTQRMRTYTKVQKRG
SVGRTIDVTRYIGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEE
FVSCVQSIKILSCAEVQQMSLNGDLGNVPVPNQASSGTDSGNAWKGHYDDNSAASFN
Download sequence
Identical sequences K4CE89
Solyc07g042260.2.1 XP_004243692.1.44838 Solyc07g042260.2.1

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