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Domain assignment for Solyc08g006200.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc08g006200.1.1
Domain Number 1 Region: 461-556
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 3.14e-20
Family B3 DNA binding domain 0.0024
Further Details:      
 
Domain Number 2 Region: 4-98
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 2.35e-18
Family B3 DNA binding domain 0.0012
Further Details:      
 
Domain Number 3 Region: 320-412
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 7.85e-17
Family B3 DNA binding domain 0.011
Further Details:      
 
Domain Number 4 Region: 181-275
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 0.00000000000000216
Family B3 DNA binding domain 0.0065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc08g006200.1.1
Sequence length 566
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:900078-905985 transcript_region:SL2.40ch08:900078..905985+ go_terms:GO:0003700 functional_description:"B3 domain-containing transcription factor VRN1 (AHRD V1 *-** VRN1_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "
Sequence
MKIPSKKSHFFKPILTGFMDGLNIPIGFMKYLRGQDYIKHALLKSAGKKWLVKVNGRRFK
EGWRKFVEDHDLQLGYLLIFRHEGDMEFDVSIFDSTHCGREYVEYLQVEQEQKQRQQEEE
EEEEKEDDDDDEEEEEVEEVVHTTEETSMDFEFKEKSSSSIESSDEASSHSEASTDKSFG
HSRFICNITACCFSYGYLRIPKHAAFANGHVTNKKYDLLIRDEKQRSWNVKLHSCQTQTY
IGGGWRKFSADCCLKEGDRIIFEIVTGGETPIWKFQVVTDAKTPMRKFQENATESPKPCV
MSSNKDLPDVEAAKDMPWSRPHFICTITHSCISKYLLHVPTLFARENGLDRKCRVKIRDE
QQRSWMFKLYVTAHNIFIGGIWHEFCSANFLKEGDRVMFEMFSKGEGLVLKFHDLRANAS
LQREQKKPNLDVKRVYTQGLRIEPSDVPAPKAQLPTPTSANTNPHFIATIKSNTISRSVL
YLPMAFIKSTGLMNRRKIILTDEKQRSWPVQLTQRVDRFVITKGFQKFMKANGVQVGDTY
KFELIDDRTIHVVYFPCKYAVKDEKA
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Identical sequences K4CIA9
Solyc08g006200.1.1 Solyc08g006200.1.1

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