SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for CGD0021612 from Theobroma cacao Matina 1-6 v0.9

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  CGD0021612
Domain Number 1 Region: 115-228
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 5.49e-30
Family B3 DNA binding domain 0.0016
Further Details:      
 
Weak hits

Sequence:  CGD0021612
Domain Number - Region: 673-744
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.0314
Family PB1 domain 0.038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) CGD0021612
Sequence length 763
Comment aalen=763,78% Dbxref=vitis:XP_002281486.1,prunus:ppa002195m
Sequence
MITFMDSKEKLKEMEKCLDSQLWHACAGGMVQMPSVNAKVFYFPQGHAEHACGPVDFRNC
PRIPAYVLCRVASVKFMADPETDEVFAKIGLIPVSTNDPDFEDDGIGSIHGNETQEKPAS
FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGT
PRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCIGIRRAKRCIGGGPESSSGWNATG
GNCVVPYGGFSAFLREDESKLMRNGSTNGLNSNSNLMGKRKVRPEQVIEAATLAANGQPF
EVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVAD
PLRWADSPWRLLQVLPRDCYVWTIDIKVHIEPTITNLVLLTANCVSVWFLHYVPLSDDCN
LMLLMTMVTWDEPDLLQNVKRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLDS
QLPMPTFSGNLLGPSSPFGCLPDHTPAGMQGARHAYYGLSLSDLHLKKLQSGLFPAGFPP
PDHAATPNRTSNGGPIIQKPSMSENVSCVLTMAHSTQNCKKTDDAKTPQLVLFGQPILTE
QQISLSCSADTVSPVLTGNSSSEGNVDKMANFSDGSGSALHQQGLPERSSCEGFPWYKDN
RQEAETNLETGHCKVFMEAEDVGRTLDLSFLGSYDELYRKLADMFGIENSETLSHVLYRD
VTGAVKHIGDEPFSDFMKTARRLTILMDSSSDNVGEYKGRNKH
Download sequence
Identical sequences CGD0021612

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]