SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for GRMZM2G377079_P01 from Zea mays subsp. mays

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  GRMZM2G377079_P01
Domain Number 1 Region: 17-99
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.0000456
Family PHD domain 0.011
Further Details:      
 
Weak hits

Sequence:  GRMZM2G377079_P01
Domain Number - Region: 100-171
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.00186
Family PHD domain 0.076
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: GRMZM2G377079_P01   Gene: GRMZM2G377079   Transcript: GRMZM2G377079_T01
Sequence length 277
Comment seq=translation; coord=3:99042614..99045033:1; parent_transcript=GRMZM2G377079_T01; parent_gene=GRMZM2G377079
Sequence
MARKKATVEQLRTLNKVREFKRRRNMHKAAGAGPGNKGENVCAICDDGGNLTCCEGCCQR
SFHLDNEHNCIKTLGLTIQEAKNIIEKEDFICKNCQYKQHQCFICGSLGSSDDTDTSSQQ
VFQCEHDDCARFYHPKCVAQMLYPDSQELFELHVAAGESFTCPMHECIVCKEVDNKKDKT
LLDFVNLFYRKHEIVRELQTPARNHIVFPESNVLKTFQALYAQREAPDHSSSKQTHSSPP
PAARDQNQCYCSSPLCSFAPSSVFMRPHPGSSGWLDD
Download sequence
Identical sequences GRMZM2G377079_P01 GRMZM2G377079_T01|PACid:20825357

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]