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DNA-binding pseudobarrel domain superfamily domain assignments
in
Mimulus guttatus v140

Assignment details

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Mimulus guttatus v140 has 118 significant domains in 99 proteins.

     

Sequence ID   Evalue   Region   Family  
mgv11b012943m|PACid:17689107   9.42e-25   39-136   B3 DNA binding domain  
mgv11b014940m|PACid:17682536   5.3e-21   64-164   B3 DNA binding domain  
  0.00112   218-266   B3 DNA binding domain  
mgv11b015827m|PACid:17673189   8.04e-22   112-201   B3 DNA binding domain  
  6.08e-16   3-93   B3 DNA binding domain  
mgv11b018073m|PACid:17687873   1.02e-17   40-127   B3 DNA binding domain  
  0.00000000000000765   208-271   B3 DNA binding domain  
mgv11b019660m|PACid:17683455   3.53e-22   133-224   B3 DNA binding domain  
  3.34e-17   10-103   B3 DNA binding domain  
mgv11b020199m|PACid:17670600   0.00000314   110-225   B3 DNA binding domain  
mgv11b021846m|PACid:17675679   0.000000549   14-71   B3 DNA binding domain  
mgv11b021892m|PACid:17678857   1.24e-19   93-200   B3 DNA binding domain  
  0.0000000000000334   23-82   B3 DNA binding domain  
mgv1a000668m|PACid:17695553   2.88e-42   123-261   B3 DNA binding domain  
mgv1a001352m|PACid:17675785   2.09e-41   96-236   B3 DNA binding domain  
mgv1a001371m|PACid:17697052   1.7e-40   139-272   B3 DNA binding domain  
mgv1a001422m|PACid:17696023   2.35e-48   118-261   B3 DNA binding domain  
mgv1a001444m|PACid:17696382   2.35e-19   267-369   B3 DNA binding domain  
mgv1a001449m|PACid:17670365   2.35e-47   113-257   B3 DNA binding domain  
mgv1a001526m|PACid:17695315   1.83e-44   115-255   B3 DNA binding domain  
mgv1a001550m|PACid:17682967   2.49e-47   128-271   B3 DNA binding domain  
mgv1a001615m|PACid:17694863   1.31e-19   314-418   B3 DNA binding domain  
mgv1a001687m|PACid:17697053   1.57e-40   139-272   B3 DNA binding domain  
mgv1a002020m|PACid:17694660   3.27e-48   32-176   B3 DNA binding domain  
mgv1a002381m|PACid:17695121   1.28e-29   110-232   B3 DNA binding domain  
mgv1a002726m|PACid:17697076   4.84e-41   88-230   B3 DNA binding domain  
mgv1a002753m|PACid:17683049   2.22e-29   116-233   B3 DNA binding domain  
mgv1a002956m|PACid:17683497   2.88e-46   135-277   B3 DNA binding domain  
mgv1a002959m|PACid:17690862   1.7e-42   147-258   B3 DNA binding domain  
mgv1a002989m|PACid:17683498   3.14e-41   67-205   B3 DNA binding domain  
mgv1a003127m|PACid:17686590   3.79e-43   66-205   B3 DNA binding domain  
mgv1a003422m|PACid:17687392   0.000000000222   29-100   B3 DNA binding domain  
mgv1a004183m|PACid:17669914   7.06e-24   226-328   B3 DNA binding domain  
  7.65e-24   422-521   B3 DNA binding domain  
  1.61e-23   4-102   B3 DNA binding domain  
mgv1a004496m|PACid:17682794   6.47e-22   29-123   B3 DNA binding domain  
  0.000000184   433-500   B3 DNA binding domain  
mgv1a004523m|PACid:17674410   2.75e-30   112-232   B3 DNA binding domain  
mgv1a004525m|PACid:17682795   6.47e-22   29-123   B3 DNA binding domain  
  0.000000184   431-498   B3 DNA binding domain  
mgv1a005357m|PACid:17671079   1.79e-22   130-227   B3 DNA binding domain  
mgv1a005456m|PACid:17674612   2.35e-22   131-229   B3 DNA binding domain  
mgv1a006218m|PACid:17682960   4.32e-21   91-185   B3 DNA binding domain  
mgv1a007604m|PACid:17681937   1.71e-21   57-156   B3 DNA binding domain  
mgv1a007873m|PACid:17682961   0.00000000000000163   48-125   B3 DNA binding domain  
mgv1a008064m|PACid:17675496   7.06e-23   46-140   B3 DNA binding domain  
mgv1a008472m|PACid:17691259   0.00000133   226-328   B3 DNA binding domain  
mgv1a009052m|PACid:17674772   0.0000000902   244-345   B3 DNA binding domain  
  0.000000153   17-121   B3 DNA binding domain  
  0.0000051   144-226   B3 DNA binding domain  
mgv1a009293m|PACid:17674048   6.54e-31   67-176   B3 DNA binding domain  
mgv1a009303m|PACid:17682962   0.00000000000000334   6-79   B3 DNA binding domain  
mgv1a009431m|PACid:17688648   8.63e-30   165-267   B3 DNA binding domain  
mgv1a009633m|PACid:17695406   1.06e-20   30-122   B3 DNA binding domain  
mgv1a011106m|PACid:17694599   1e-22   134-234   B3 DNA binding domain  
mgv1a011529m|PACid:17689041   2.55e-20   12-113   B3 DNA binding domain  
  0.0000000000294   169-256   B3 DNA binding domain  
mgv1a011866m|PACid:17679087   1.96e-16   155-262   B3 DNA binding domain  
mgv1a013817m|PACid:17686787   4.71e-30   45-148   B3 DNA binding domain  
mgv1a014508m|PACid:17678849   1.88e-20   11-108   B3 DNA binding domain  
  1.63e-18   110-186   B3 DNA binding domain  
mgv1a014551m|PACid:17697115   0.00000746   63-161   B3 DNA binding domain  
mgv1a014607m|PACid:17695109   3.34e-24   80-177   B3 DNA binding domain  
mgv1a014702m|PACid:17684518   6.28e-19   76-162   B3 DNA binding domain  
mgv1a014840m|PACid:17692580   1.14e-17   54-145   B3 DNA binding domain  
mgv1a015135m|PACid:17688745   0.00000000000000171   46-134   B3 DNA binding domain  
mgv1a016740m|PACid:17679370   3.53e-21   15-108   B3 DNA binding domain  
mgv1a018740m|PACid:17685571   3.34e-18   113-218   B3 DNA binding domain  
mgv1a018767m|PACid:17676319   0.000000000000373   37-132   B3 DNA binding domain  
mgv1a018968m|PACid:17696847   0.00000318   195-297   B3 DNA binding domain  
mgv1a018970m|PACid:17682600   0.0000000000314   3-118   B3 DNA binding domain  
mgv1a019054m|PACid:17674647   0.000000000314   73-189   B3 DNA binding domain  
mgv1a019385m|PACid:17689901   3.79e-18   271-369   B3 DNA binding domain  
mgv1a019847m|PACid:17690719   3.34e-20   1-78   B3 DNA binding domain  
mgv1a020275m|PACid:17695857   1.73e-21   35-131   B3 DNA binding domain  
mgv1a020505m|PACid:17678668   0.00000000000133   2-100   B3 DNA binding domain  
mgv1a020517m|PACid:17676873   0.0000000322   138-253   B3 DNA binding domain  
mgv1a020736m|PACid:17680166   2.75e-16   40-123   B3 DNA binding domain  
mgv1a020932m|PACid:17689037   0.0000000000000327   109-185   B3 DNA binding domain  
mgv1a021021m|PACid:17685080   1.18e-29   121-236   B3 DNA binding domain  
mgv1a021057m|PACid:17695538   2.75e-16   2-81   B3 DNA binding domain  
  0.000000922   115-207   B3 DNA binding domain  
mgv1a021146m|PACid:17690237   1.96e-24   42-141   B3 DNA binding domain  
mgv1a021154m|PACid:17696168   2.22e-29   110-219   B3 DNA binding domain  
mgv1a021192m|PACid:17690377   8.11e-31   60-174   B3 DNA binding domain  
mgv1a021365m|PACid:17683516   0.0000000302   152-269   B3 DNA binding domain  
mgv1a021929m|PACid:17690783   0.000000000177   77-193   B3 DNA binding domain  
mgv1a021961m|PACid:17675578   0.000000000151   28-147   B3 DNA binding domain  
mgv1a021969m|PACid:17677823   0.000000000373   10-123   B3 DNA binding domain  
mgv1a022030m|PACid:17697515   0.000000000294   13-81   B3 DNA binding domain  
mgv1a022380m|PACid:17682370   0.000000000118   42-158   B3 DNA binding domain  
mgv1a022509m|PACid:17685643   5.3e-18   29-136   B3 DNA binding domain  
  0.000000000000145   139-214   B3 DNA binding domain  
mgv1a022963m|PACid:17670317   0.00000000139   58-157   B3 DNA binding domain  
mgv1a023145m|PACid:17677675   2.55e-21   36-131   B3 DNA binding domain  
mgv1a023506m|PACid:17673103   0.0000000155   163-278   B3 DNA binding domain  
mgv1a023691m|PACid:17681555   0.000000000608   118-235   B3 DNA binding domain  
mgv1a023706m|PACid:17683014   6.41e-26   173-280   B3 DNA binding domain  
mgv1a024196m|PACid:17692421   1.31e-20   44-128   B3 DNA binding domain  
  0.00000131   150-176   B3 DNA binding domain  
mgv1a024694m|PACid:17676091   0.0000000000049   146-250   B3 DNA binding domain  
mgv1a024973m|PACid:17670345   2.55e-21   13-105   B3 DNA binding domain  
mgv1a025067m|PACid:17674538   0.00000000104   115-232   B3 DNA binding domain  
mgv1a025237m|PACid:17695872   3.92e-23   554-651   B3 DNA binding domain  
mgv1a025604m|PACid:17678183   4.32e-22   13-108   B3 DNA binding domain  
mgv1a025795m|PACid:17679739   0.000000000235   12-81   B3 DNA binding domain  
mgv1a025934m|PACid:17697467   0.0000000687   27-60   B3 DNA binding domain  
mgv1a026121m|PACid:17673158   1.67e-18   132-227   B3 DNA binding domain  
  5.69e-17   243-316   B3 DNA binding domain  
  0.00000000000353   5-52   B3 DNA binding domain  
mgv1a026151m|PACid:17686817   0.0000000000608   43-159   B3 DNA binding domain  
mgv1a026245m|PACid:17684364   8.44e-17   2-81   B3 DNA binding domain  
  0.000000235   115-207   B3 DNA binding domain  
mgv1a026278m|PACid:17697184   3.53e-18   2-80   B3 DNA binding domain  
  0.00049   88-115   B3 DNA binding domain  
mgv1a026308m|PACid:17674221   0.0000000942   323-425   B3 DNA binding domain  
mgv1a026842m|PACid:17686862   0.00000000883   224-323   B3 DNA binding domain  
mgv1a026884m|PACid:17691818   1.77e-18   7-106   B3 DNA binding domain  
  0.00000129   164-214   B3 DNA binding domain  
mgv1a027022m|PACid:17684859   3.66e-19   283-382   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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