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Retrovirus capsid protein, N-terminal core domain superfamily domain assignments
in
Sarcophilus harrisii 69_7.0

Network of domain occurrence in all genomes


Assignment details

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Sarcophilus harrisii 69_7.0 has 30 significant domains in 30 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSHAP00000000064   1.26e-31   222-363   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000196   3.06e-20   1-138   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000212   3.84e-26   10-167   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000246   1.18e-26   18-160   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000284   1.57e-30   212-351   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000300   7.85e-30   180-337   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000313   2.98e-28   7-151   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000325   2.82e-27   16-156   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000362   2.04e-23   1-111   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000391   2.2e-28   3-142   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000400   1.18e-31   212-341   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000466   5.57e-19   1-106   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000525   2.59e-24   17-142   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000526   1.41e-22   6-158   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000541   1.96e-19   15-163   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000554   1.26e-25   2-128   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000574   1.02e-22   1-116   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000577   1.73e-20   1-110   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000651   5.65e-26   200-342   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000653   8.63e-23   1-114   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000664   7.85e-28   8-159   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000000684   4.55e-19   1-117   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000001434   1.1e-16   4-134   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000002618   3.14e-20   6-169   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000006455   3.45e-22   1-109   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000007202   8.63e-21   19-157   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000008709   0.000000000188   21-103   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000011442   4.47e-28   10-138   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000013840   7.85e-31   9-173   Retrovirus capsid protein, N-terminal core domain  
ENSSHAP00000019687   2.75e-19   7-109   Retrovirus capsid protein, N-terminal core domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   115773 115773
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 30 30
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Sus scrofa 76_10.2 Pig 16 16
No Yes Ovis aries 76_3.1 Sheep 53 53
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Felis catus 76_6.2 Domestic cat 73 73
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 16 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 32 32
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 16 16
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Trypanosoma congolense 2.4   4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 30
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 103 103
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1881 1863
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes STRING v9.0.5 (STRING)   54 54
No Yes Uniprot 2018_03 genome   71776 71770
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   58 58
No Yes PDB chains (SCOP 1.75) (PDB)   19 19
No Yes Protein Data Bank (all PDB sequenc)   3127 3127
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   5884 5884
No Yes UniProt viral sequences (Viral)   32297 32292

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