SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


DNA-binding pseudobarrel domain superfamily domain assignments
in
Lotus japonicus

Assignment details

(show help)


Lotus japonicus (Early assembly) has 83 significant domains in 76 proteins.

     

Sequence ID   Evalue   Region   Family  
LjSGA_009543.1   8.37e-16   298-416   B3 DNA binding domain  
LjSGA_011266.1   2.49e-32   76-179   B3 DNA binding domain  
LjSGA_014614.1   0.0000000000000114   3-111   B3 DNA binding domain  
LjSGA_021975.1   1.29e-19   9-91   B3 DNA binding domain  
LjSGA_022280.1   5.76e-47   90-231   B3 DNA binding domain  
LjSGA_022281.1   8.76e-45   59-198   B3 DNA binding domain  
LjSGA_022975.2   1.11e-29   63-135   B3 DNA binding domain  
LjSGA_024722.1   0.000000837   3-60   B3 DNA binding domain  
LjSGA_026543.1   3.79e-31   112-187   B3 DNA binding domain  
LjSGA_029833.1   1.09e-16   257-348   B3 DNA binding domain  
LjSGA_030678.1   3.4e-24   152-233   B3 DNA binding domain  
LjSGA_030680.1   9.22e-22   36-139   B3 DNA binding domain  
LjSGA_031594.1   8.63e-27   156-260   B3 DNA binding domain  
LjSGA_031920.1   0.00000000000000235   3-52   B3 DNA binding domain  
LjSGA_037319.1   0.0000000000000536   9-78   B3 DNA binding domain  
LjSGA_037503.0.2   0.00000000883   2-79   B3 DNA binding domain  
LjSGA_045968.2   3.27e-21   122-191   B3 DNA binding domain  
LjSGA_050727.1   0.0000000000275   162-273   B3 DNA binding domain  
LjSGA_059323.1   4.71e-40   15-154   B3 DNA binding domain  
LjSGA_059669.1   9.94e-45   46-161   B3 DNA binding domain  
LjSGA_063680.1   0.00000000647   49-155   B3 DNA binding domain  
LjSGA_065299.1   0.0000298   66-129   B3 DNA binding domain  
LjSGA_066791.0.1   1.28e-18   3-84   B3 DNA binding domain  
LjSGA_068216.1   1.96e-41   46-179   B3 DNA binding domain  
LjSGA_069146.1   6.28e-46   32-171   B3 DNA binding domain  
LjSGA_080421.2   0.0000000275   199-232   B3 DNA binding domain  
LjSGA_093431.0.1   0.000000824   67-100   B3 DNA binding domain  
LjSGA_103336.1   3.27e-44   24-137   B3 DNA binding domain  
LjSGA_110952.0.1   2.94e-19   47-133   B3 DNA binding domain  
LjSGA_111419.1   2.16e-25   32-126   B3 DNA binding domain  
LjSGA_144865.1   0.000000000000981   2-41   B3 DNA binding domain  
LjSGA_145690.1   0.000000000334   64-103   B3 DNA binding domain  
LjT09F05.60.nd   0.0000000667   4-74   B3 DNA binding domain  
LjT09K03.40.nd   0.0000151   10-93   B3 DNA binding domain  
LjT10E17.180.nd   3.53e-20   34-126   B3 DNA binding domain  
LjT14E02.50.nd   0.00000000314   1-48   B3 DNA binding domain  
LjT14E23.70.nc   1.2e-20   10-108   B3 DNA binding domain  
  0.0000000000116   194-259   B3 DNA binding domain  
LjT15D16.50.nc   1.22e-29   56-163   B3 DNA binding domain  
LjT29B06.50.nd   0.00000001   3-80   B3 DNA binding domain  
chr1.CM0001.570.nc   3.53e-20   1-85   B3 DNA binding domain  
chr1.CM0033.1110.nc   0.000000000000412   112-212   B3 DNA binding domain  
chr1.CM0051.100.nc   6.15e-35   2-112   B3 DNA binding domain  
chr1.CM0105.800.nc   8.63e-30   33-124   B3 DNA binding domain  
chr1.CM0125.20.nd   0.000000334   14-78   B3 DNA binding domain  
chr1.CM0147.220.nd   6.47e-24   609-705   B3 DNA binding domain  
chr1.CM0150.60.nd   0.000000314   2-80   B3 DNA binding domain  
chr1.CM0233.410.nc   0.00000000432   17-105   B3 DNA binding domain  
  0.000000844   141-210   B3 DNA binding domain  
chr1.LjT31L11.90.nd   2.22e-29   142-264   B3 DNA binding domain  
chr1.LjT43L07.10.nd   4.71e-39   107-245   B3 DNA binding domain  
chr2.CM0201.60.nd   4.05e-16   24-61   Type II restriction endonuclease effector domain  
chr2.CM0262.200.nc   2.16e-24   2-97   B3 DNA binding domain  
  8.83e-24   295-396   B3 DNA binding domain  
chr2.CM0308.470.nd   1.12e-24   2-97   B3 DNA binding domain  
  8.83e-24   279-380   B3 DNA binding domain  
chr2.CM0373.570.nc   3.79e-43   109-249   B3 DNA binding domain  
chr2.LjT10F02.130.nd   0.00000000000000294   218-318   B3 DNA binding domain  
chr2.LjT10F02.140.nd   4.32e-19   179-264   B3 DNA binding domain  
chr2.LjT10F02.180.nd   0.00000000000000373   1-79   B3 DNA binding domain  
chr3.CM0111.110.nd   4.45e-41   148-263   B3 DNA binding domain  
chr3.LjT10E18.60.nc   1.03e-29   109-217   B3 DNA binding domain  
chr3.LjT23H01.130.nc   2.35e-25   285-386   B3 DNA binding domain  
  1.24e-21   3-96   B3 DNA binding domain  
chr3.LjT36L08.120.nc   0.00000549   2-45   B3 DNA binding domain  
chr4.CM0003.360.nc   0.000000000018   213-305   B3 DNA binding domain  
  0.0124   3-64   B3 DNA binding domain  
chr4.CM0006.290.nc   1.83e-44   116-255   B3 DNA binding domain  
chr4.CM0175.280.nc   6.41e-39   152-285   B3 DNA binding domain  
chr4.CM0288.1050.nd   0.000000569   2-79   B3 DNA binding domain  
chr4.LjT16L01.190.nd   1.44e-26   106-205   B3 DNA binding domain  
chr5.CM0040.780.nc   1.94e-20   5-102   B3 DNA binding domain  
  1.29e-17   208-301   B3 DNA binding domain  
  6.47e-16   368-471   B3 DNA binding domain  
chr5.CM0040.790.nc   3.34e-18   2-78   B3 DNA binding domain  
chr5.CM0089.1040.nd   0.000000000000141   3-51   B3 DNA binding domain  
chr5.CM0211.230.nc   6.87e-16   123-213   B3 DNA binding domain  
  0.00159   2-62   B3 DNA binding domain  
chr5.CM0328.440.nd   0.00000000000235   49-160   B3 DNA binding domain  
chr5.CM1598.110.nc   0.000000000171   171-276   B3 DNA binding domain  
chr5.LjT41L03.150.nd   0.00000275   18-104   B3 DNA binding domain  
chr6.CM0118.10.nd   3.66e-20   22-85   B3 DNA binding domain  
chr6.CM0302.130.nc   0.00000275   150-220   B3 DNA binding domain  
  0.0159   23-103   B3 DNA binding domain  
chr6.CM0420.10.nd   2.62e-29   64-132   B3 DNA binding domain  
chr6.CM0420.80.nd   0.00000000222   2-71   B3 DNA binding domain  
 
Weak hits:
LjSGA_018342.1   0.0051   291-316   B3 DNA binding domain  
LjT34B08.90.nd   0.000196   9-54   B3 DNA binding domain  
chr3.CM0059.230.nc   0.000255   26-89   B3 DNA binding domain  
chr5.LjT18P14.30.nd   0.00589   5-51   B3 DNA binding domain  
chr6.CM0037.340.nc   0.000182   3-81   B3 DNA binding domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]