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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza sativa ssp. Indica

Assignment details

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Oryza sativa ssp. Indica (Subspecies) has 135 significant domains in 95 proteins.

     

Sequence ID   Evalue   Region   Family  
OsIBCD000279   4.19e-30   163-275   B3 DNA binding domain  
OsIBCD000875   0.0000000000000353   95-160   B3 DNA binding domain  
OsIBCD000889   4.71e-37   113-251   B3 DNA binding domain  
OsIBCD002031   0.000000000001   63-148   B3 DNA binding domain  
OsIBCD002033   0.000000000000412   63-148   B3 DNA binding domain  
OsIBCD002863   2.35e-43   139-279   B3 DNA binding domain  
OsIBCD002987   2.09e-30   151-246   B3 DNA binding domain  
OsIBCD003166   1.49e-23   282-378   B3 DNA binding domain  
  4.71e-21   16-124   B3 DNA binding domain  
OsIBCD003168   1.1e-17   13-99   B3 DNA binding domain  
OsIBCD003335   2.35e-47   126-281   B3 DNA binding domain  
OsIBCD004220   1.79e-22   76-174   B3 DNA binding domain  
  0.0000000000000549   583-675   B3 DNA binding domain  
OsIBCD004256   9.55e-22   535-629   B3 DNA binding domain  
OsIBCD004370   9.42e-40   116-253   B3 DNA binding domain  
OsIBCD005019   1.83e-37   143-260   B3 DNA binding domain  
OsIBCD005173   1.44e-48   119-263   B3 DNA binding domain  
OsIBCD005413   3.34e-18   12-112   B3 DNA binding domain  
  0.0000000000000216   188-257   B3 DNA binding domain  
OsIBCD006159   0.00000000000255   1594-1691   B3 DNA binding domain  
OsIBCD006861   4.58e-44   117-257   B3 DNA binding domain  
OsIBCD007097   1.96e-16   378-471   B3 DNA binding domain  
  0.00000000000883   1000-1056   B3 DNA binding domain  
OsIBCD007290   1.07e-28   116-222   B3 DNA binding domain  
OsIBCD008067   2.75e-18   107-175   B3 DNA binding domain  
OsIBCD008966   0.00000000141   40-130   B3 DNA binding domain  
OsIBCD009085   4.12e-24   130-227   B3 DNA binding domain  
OsIBCD009264   2.35e-19   13-116   B3 DNA binding domain  
  7.46e-16   156-247   B3 DNA binding domain  
OsIBCD011201   1.1e-22   3-96   B3 DNA binding domain  
  1.04e-18   176-282   B3 DNA binding domain  
  3.01e-18   374-477   B3 DNA binding domain  
OsIBCD011202   3.34e-20   23-121   B3 DNA binding domain  
  3.34e-18   223-328   B3 DNA binding domain  
  1.24e-16   440-530   B3 DNA binding domain  
OsIBCD011203   6.93e-24   23-121   B3 DNA binding domain  
  6.8e-16   245-350   B3 DNA binding domain  
OsIBCD011206   8.63e-24   242-335   B3 DNA binding domain  
  1.22e-20   25-124   B3 DNA binding domain  
  5.3e-19   409-516   B3 DNA binding domain  
OsIBCD011208   1.96e-17   25-117   B3 DNA binding domain  
OsIBCD011212   6.87e-22   25-125   B3 DNA binding domain  
  1.44e-19   431-539   B3 DNA binding domain  
  8.24e-19   222-324   B3 DNA binding domain  
OsIBCD011218   5.89e-25   18-116   B3 DNA binding domain  
  1.02e-23   309-407   B3 DNA binding domain  
  5.1e-22   541-640   B3 DNA binding domain  
  5.49e-18   742-840   B3 DNA binding domain  
  0.00000000000000373   205-283   B3 DNA binding domain  
OsIBCD011221   9.22e-21   176-279   B3 DNA binding domain  
  6.47e-20   17-98   B3 DNA binding domain  
OsIBCD011222   2.94e-23   28-129   B3 DNA binding domain  
  0.000000000000184   252-345   B3 DNA binding domain  
OsIBCD011223   4.32e-19   30-129   B3 DNA binding domain  
  2.16e-16   252-342   B3 DNA binding domain  
OsIBCD013884   4.9e-19   167-266   B3 DNA binding domain  
  0.0000000000000275   346-455   B3 DNA binding domain  
  0.00000000000608   48-148   B3 DNA binding domain  
OsIBCD013888   3.34e-18   148-248   B3 DNA binding domain  
  0.0000000000000051   321-430   B3 DNA binding domain  
  0.0000000000000471   20-126   B3 DNA binding domain  
OsIBCD014113   0.00000000000000275   72-171   B3 DNA binding domain  
OsIBCD014445   4.84e-45   106-251   B3 DNA binding domain  
OsIBCD014998   9.94e-29   118-226   B3 DNA binding domain  
OsIBCD015196   0.00000000353   819-908   B3 DNA binding domain  
OsIBCD015915   6.41e-39   133-236   B3 DNA binding domain  
OsIBCD015973   7.32e-48   137-281   B3 DNA binding domain  
OsIBCD016007   0.00000000000301   296-401   B3 DNA binding domain  
OsIBCD016008   7.59e-19   367-463   B3 DNA binding domain  
OsIBCD016097   2.09e-26   113-233   B3 DNA binding domain  
OsIBCD017071   0.00000255   433-494   B3 DNA binding domain  
OsIBCD018391   4.9e-19   132-217   B3 DNA binding domain  
OsIBCD018883   2.75e-43   136-258   B3 DNA binding domain  
OsIBCD018900   0.00000169   268-368   B3 DNA binding domain  
OsIBCD019153   7.06e-26   33-133   B3 DNA binding domain  
OsIBCD019175   3.53e-18   53-153   B3 DNA binding domain  
OsIBCD019696   3.92e-24   125-223   B3 DNA binding domain  
OsIBCD019711   2.49e-44   117-256   B3 DNA binding domain  
OsIBCD021489   9.42e-20   141-245   B3 DNA binding domain  
  0.0000000000451   12-126   B3 DNA binding domain  
OsIBCD021781   2.75e-48   94-238   B3 DNA binding domain  
OsIBCD021943   3.27e-43   120-260   B3 DNA binding domain  
OsIBCD022554   0.0000000000000128   478-587   B3 DNA binding domain  
  0.00000000000183   115-222   B3 DNA binding domain  
OsIBCD022555   0.0000000000017   119-232   B3 DNA binding domain  
OsIBCD022556   5.62e-17   501-601   B3 DNA binding domain  
  1.57e-16   119-228   B3 DNA binding domain  
OsIBCD022813   0.0000000000000161   4-99   B3 DNA binding domain  
OsIBCD023005   9.42e-21   67-156   B3 DNA binding domain  
OsIBCD023899   2.22e-19   342-444   B3 DNA binding domain  
OsIBCD024720   8.04e-16   249-337   B3 DNA binding domain  
OsIBCD025798   0.00000000942   241-292   B3 DNA binding domain  
  0.0000000235   425-473   B3 DNA binding domain  
OsIBCD026037   6.08e-21   20-114   B3 DNA binding domain  
  0.00000000000000392   279-378   B3 DNA binding domain  
OsIBCD026038   0.0000000785   19-79   B3 DNA binding domain  
OsIBCD026044   3.34e-19   22-123   B3 DNA binding domain  
  0.00000000000000104   320-419   B3 DNA binding domain  
OsIBCD027120   4.71e-42   89-228   B3 DNA binding domain  
OsIBCD030091   0.0000000000471   137-211   B3 DNA binding domain  
OsIBCD030979   1.83e-29   119-232   B3 DNA binding domain  
OsIBCD031888   1.57e-29   35-130   B3 DNA binding domain  
OsIBCD032115   1.83e-25   307-407   B3 DNA binding domain  
  3.01e-22   47-143   B3 DNA binding domain  
OsIBCD033006   4.02e-41   144-278   B3 DNA binding domain  
OsIBCD034096   1.44e-30   33-127   B3 DNA binding domain  
OsIBCD034941   5.49e-36   112-267   B3 DNA binding domain  
OsIBCD035530   7.26e-21   1752-1852   B3 DNA binding domain  
  1.92e-19   1484-1574   B3 DNA binding domain  
  4.71e-18   2111-2219   B3 DNA binding domain  
  0.00000000000000153   1627-1706   B3 DNA binding domain  
  0.0000000000000255   1960-2064   B3 DNA binding domain  
OsIBCD035531   1.02e-22   5-100   B3 DNA binding domain  
  1e-19   362-468   B3 DNA binding domain  
  3.53e-18   211-310   B3 DNA binding domain  
OsIBCD035532   7.06e-21   241-342   B3 DNA binding domain  
  4.32e-18   21-124   B3 DNA binding domain  
OsIBCD035534   2.55e-18   253-356   B3 DNA binding domain  
  9.42e-18   21-124   B3 DNA binding domain  
OsIBCD035656   7.06e-49   117-261   B3 DNA binding domain  
OsIBCD035889   1.83e-29   174-287   B3 DNA binding domain  
OsIBCD035891   4.71e-30   180-292   B3 DNA binding domain  
OsIBCD036079   0.000000114   39-144   B3 DNA binding domain  
OsIBCD037717   1.2e-18   27-126   B3 DNA binding domain  
OsIBCD037718   5.1e-19   27-131   B3 DNA binding domain  
OsIBCD038148   5.36e-29   92-200   B3 DNA binding domain  
OsIBCD038424   6.67e-29   34-125   B3 DNA binding domain  
OsIBCD039988   0.0000000000000451   6-97   B3 DNA binding domain  
OsIBCD040422   6.67e-29   84-175   B3 DNA binding domain  
OsIBCD041439   1.83e-28   191-311   B3 DNA binding domain  
OsIBCD041561   4.32e-25   33-137   B3 DNA binding domain  
OsIBCD042678   3.14e-19   351-452   B3 DNA binding domain  
OsIBCD043499   1.29e-27   68-162   B3 DNA binding domain  
OsIBCD043725   0.00000186   121-166   B3 DNA binding domain  
OsIBCD045517   1.7e-28   32-136   B3 DNA binding domain  
 
Weak hits:
OsIBCD001615   0.0137   38-74   B3 DNA binding domain  
OsIBCD003105   0.000341   66-105   B3 DNA binding domain  
OsIBCD025852   0.00628   241-304   B3 DNA binding domain  
OsIBCD036706   0.000108   267-331   B3 DNA binding domain  
OsIBCD037412   0.0549   138-169   B3 DNA binding domain  
OsIBCD037478   0.0628   23-65   Type II restriction endonuclease effector domain  
OsIBCD040923   0.0188   306-355   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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