SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


GLA-domain superfamily domain assignments
in
Rattus norvegicus 69_3.4

Assignment details

(show help)


Rattus norvegicus 69_3.4 has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000003233   1.43e-21   19-76   GLA-domain  
ENSRNOP00000004559   9.62e-26   47-109   GLA-domain  
ENSRNOP00000007577   0.00000000135   65-98   GLA-domain  
ENSRNOP00000019596   6.22e-22   41-99   GLA-domain  
ENSRNOP00000022233   1.45e-19   45-105   GLA-domain  
ENSRNOP00000024677   5.89e-19   46-103   GLA-domain  
ENSRNOP00000026530   0.0000000000118   62-97   GLA-domain  
ENSRNOP00000026677   1.85e-25   40-103   GLA-domain  
ENSRNOP00000027849   1.01e-19   53-109   GLA-domain  
ENSRNOP00000032611   3.2e-18   53-106   GLA-domain  
ENSRNOP00000038466   3.14e-23   41-104   GLA-domain  
ENSRNOP00000060854   1.21e-24   80-142   GLA-domain  
ENSRNOP00000063292   3.36e-21   20-75   GLA-domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a GLA-domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   10650 10650
No Yes Homo sapiens 76_38 Human 39 39
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 14 14
No Yes Gorilla gorilla 76_3.1 Western gorilla 19 19
No Yes Pongo abelii 76_2 Sumatran orangutan 12 12
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 12 12
No Yes Papio anubis 76 Olive baboon 15 15
No Yes Macaca mulatta 76_1 Rhesus monkey 16 16
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 23 23
No Yes Otolemur garnettii 76_3 Small-eared galago 11 11
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 76_5.0 Norway rat 15 15
No Yes Mus musculus 76_38 House mouse 32 32
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 13
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 15
No Yes Cavia porcellus 76_3 Domestic guinea pig 13 13
No Yes Oryctolagus cuniculus 76_2 Rabbit 9 9
No Yes Ochotona princeps 76 American pika 6 6
No Yes Tupaia belangeri 76 Northern tree shrew 4 4
No Yes Sus scrofa 76_10.2 Pig 14 14
No Yes Bos taurus 76_3.1 Cattle 12 12
No Yes Ovis aries 76_3.1 Sheep 14 14
No Yes Vicugna pacos 76_1 Alpaca 5 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 76_1.0 Domestic ferret 10 10
No Yes Ailuropoda melanoleuca 76_1 Giant panda 15 15
No Yes Canis familiaris 76_3.1 Dog 14 14
No Yes Felis catus 76_6.2 Domestic cat 12 12
No Yes Equus caballus 76_2 Horse 13 13
No Yes Myotis lucifugus 76_2.0 Little brown bat 15 15
No Yes Pteropus vampyrus 76_1 Large flying fox 11 11
No Yes Sorex araneus 76_1 European shrew 7 7
No Yes Erinaceus europaeus 76 Western European hedgehog 5 5
No Yes Procavia capensis 76_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 76_3 African savanna elephant 18 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 11 11
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 12
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 5 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 14
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 14 14
No Yes Ornithorhynchus anatinus 76_5 Platypus 10 10
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 6 6
No Yes Meleagris gallopavo 76_2 Turkey 13 13
No Yes Gallus gallus 76_4 Chicken 13 13
No Yes Anas platyrhynchos 76_1.0 Mallard 13 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 13 13
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 15 15
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 15 15
No Yes Anolis carolinensis 76_2.0 Green anole 12 12
No Yes Xenopus laevis African clawed frog 39 39
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 18 18
No Yes Latimeria chalumnae 76_1 Coelacanth 20 20
No Yes Lepisosteus oculatus 76 Spotted gar 20 20
No Yes Gadus morhua 76_1 Atlantic cod 16 16
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 28 28
No Yes Takifugu rubripes 76_4 Torafugu 81 81
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 26 26
No Yes Oryzias latipes 76_1 Japanese medaka 17 17
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 18 18
No Yes Poecilia formosa 76 Amazon molly 16 15
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 17 17
No Yes Astyanax mexicanus 76 Mexican tetra 18 18
No Yes Danio rerio 76_9 Zebrafish 38 38
No Yes Oikopleura dioica   8 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 6 6
No Yes Acropora digitifera v1.0   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 33 33
No Yes Homo sapiens 75_37 (old version GRC) Human 50 50
No Yes Homo sapiens (NCBI version) Human 20 20
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 16 16
No Yes Homo sapiens 69_37 Human 15 15
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 14 14
No Yes Gorilla gorilla 69_3.1 Western gorilla 13 13
No Yes Pongo abelii 69_2 Sumatran orangutan 12 12
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 12 12
No Yes Macaca mulatta 69_1 Rhesus monkey 11 11
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 13 13
No Yes Otolemur garnettii 69_3 Small-eared galago 11 11
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 69_3.4 Norway rat 13 13
No Yes Mus musculus 69_38 House mouse 16 16
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 13
No Yes Cavia porcellus 69_3 Domestic guinea pig 13 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 9 9
No Yes Ochotona princeps 69 American pika 6 6
No Yes Tupaia belangeri 69 Northern tree shrew 4 4
No Yes Sus scrofa 69_10.2 Pig 13 13
No Yes Bos taurus 69_3.1 Cattle 12 12
No Yes Vicugna pacos 69_1 Alpaca 5 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 69_1.0 Domestic ferret 10 10
No Yes Ailuropoda melanoleuca 69_1 Giant panda 14 14
No Yes Canis familiaris 69_3.1 Dog 12 12
No Yes Felis catus 69 Domestic cat 7 7
No Yes Equus caballus 69_2 Horse 13 13
No Yes Myotis lucifugus 69_2.0 Little brown bat 15 15
No Yes Pteropus vampyrus 69_1 Large flying fox 11 11
No Yes Sorex araneus 69_1 European shrew 7 7
No Yes Erinaceus europaeus 69 Western European hedgehog 5 5
No Yes Procavia capensis 69_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 69_3 African savanna elephant 15 15
No Yes Echinops telfairi 69 Small Madagascar hedgehog 11 11
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 5 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 12
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 69_5 Platypus 10 10
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 11 11
No Yes Gallus gallus 69_2 Chicken 12 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 12 12
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 12
No Yes Anolis carolinensis 69_2.0 Green anole 9 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 15 15
No Yes Latimeria chalumnae 69_1 Coelacanth 13 13
No Yes Gadus morhua 69_1 Atlantic cod 16 16
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 19 19
No Yes Takifugu rubripes 69_4 Torafugu 16 16
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 17 17
No Yes Oryzias latipes 69_1 Japanese medaka 12 12
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 18 18
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 15 15
No Yes Danio rerio 69_9 Zebrafish 21 21
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes NCBI 2017_08 genome   4916 4875
No Yes STRING v9.0.5 (STRING)   317 317
No Yes Uniprot 2018_03 genome   2593 2574
No Yes PDB chains (SCOP 1.75) (PDB)   18 18
No Yes Protein Data Bank (all PDB sequenc)   110 110
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   111 111

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]