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DNA-binding pseudobarrel domain superfamily domain assignments
in
Theobroma cacao Matina 1-6 v0.9

Assignment details

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Theobroma cacao Matina 1-6 v0.9 has 140 significant domains in 116 proteins.

     

Sequence ID   Evalue   Region   Family  
CGD0000116   0.00000000000019   107-216   B3 DNA binding domain  
CGD0000117   0.00000000000155   122-231   B3 DNA binding domain  
CGD0000118   0.000000000000569   115-224   B3 DNA binding domain  
CGD0000395   6.08e-26   25-124   B3 DNA binding domain  
  1.73e-16   294-400   B3 DNA binding domain  
CGD0000399   5.49e-19   3-82   B3 DNA binding domain  
  0.0000118   135-190   B3 DNA binding domain  
CGD0000402   2.94e-25   783-886   B3 DNA binding domain  
  3.92e-25   232-338   B3 DNA binding domain  
  2.55e-24   636-742   B3 DNA binding domain  
  5.3e-22   17-113   B3 DNA binding domain  
CGD0000405   3.92e-23   181-281   B3 DNA binding domain  
  2.94e-22   3-80   B3 DNA binding domain  
  4.71e-20   447-550   B3 DNA binding domain  
  4.12e-18   686-770   B3 DNA binding domain  
CGD0000409   2.16e-25   20-119   B3 DNA binding domain  
  5.69e-21   230-335   B3 DNA binding domain  
  6.67e-21   416-520   B3 DNA binding domain  
CGD0000410   5.89e-27   11-110   B3 DNA binding domain  
  1.04e-17   174-269   B3 DNA binding domain  
CGD0000466   1.04e-23   120-218   B3 DNA binding domain  
CGD0000536   7.32e-17   3-91   B3 DNA binding domain  
CGD0000997   1.39e-22   599-694   B3 DNA binding domain  
CGD0001995   0.000000000000275   195-305   B3 DNA binding domain  
CGD0002069   9.29e-49   113-257   B3 DNA binding domain  
CGD0002748   2.62e-30   107-214   B3 DNA binding domain  
CGD0003117   1.02e-18   138-256   B3 DNA binding domain  
CGD0006052   3.27e-29   116-225   B3 DNA binding domain  
CGD0006784   0.00000000000000111   4-95   B3 DNA binding domain  
CGD0006786   0.00000000000000133   4-96   B3 DNA binding domain  
CGD0006817   0.0000000000000432   266-357   B3 DNA binding domain  
CGD0006820   0.00000000000000255   4-94   B3 DNA binding domain  
CGD0006821   5.89e-16   4-97   B3 DNA binding domain  
CGD0006822   0.0000000000000116   4-96   B3 DNA binding domain  
CGD0008024   0.00000000294   3-96   B3 DNA binding domain  
CGD0008571   1.57e-16   4-95   B3 DNA binding domain  
CGD0008573   0.0000000000000157   3-92   B3 DNA binding domain  
CGD0008575   0.000000000746   3-90   B3 DNA binding domain  
CGD0008576   0.00000294   4-87   B3 DNA binding domain  
CGD0008577   0.000000000000275   3-95   B3 DNA binding domain  
CGD0008578   0.00000000785   2-87   B3 DNA binding domain  
CGD0008579   0.0000255   10-96   B3 DNA binding domain  
CGD0008592   1.14e-25   232-332   B3 DNA binding domain  
  8.44e-22   3-96   B3 DNA binding domain  
CGD0008597   1.88e-24   18-116   B3 DNA binding domain  
  3.53e-18   346-447   B3 DNA binding domain  
CGD0008599   1.35e-23   308-405   B3 DNA binding domain  
  3.14e-16   67-154   B3 DNA binding domain  
CGD0008600   2.16e-23   33-130   B3 DNA binding domain  
  6.87e-18   355-456   B3 DNA binding domain  
CGD0008603   1.33e-26   305-405   B3 DNA binding domain  
  7.46e-24   13-107   B3 DNA binding domain  
CGD0008610   0.0000000000000222   3-88   B3 DNA binding domain  
CGD0008613   3.14e-24   43-138   B3 DNA binding domain  
  0.00000294   1-42   B3 DNA binding domain  
CGD0008614   0.000000000000196   3-92   B3 DNA binding domain  
CGD0008623   4.12e-22   601-698   B3 DNA binding domain  
  1.18e-21   170-261   B3 DNA binding domain  
CGD0008631   1.18e-24   120-217   B3 DNA binding domain  
CGD0008639   7.26e-22   121-211   B3 DNA binding domain  
CGD0009712   7.72e-39   136-269   B3 DNA binding domain  
CGD0010154   0.0000000000471   21-114   B3 DNA binding domain  
CGD0010156   0.000000000196   5-94   B3 DNA binding domain  
CGD0010157   0.0000000000471   6-99   B3 DNA binding domain  
CGD0010158   0.0000000000785   5-99   B3 DNA binding domain  
CGD0010159   0.000000000294   5-95   B3 DNA binding domain  
CGD0010160   0.0000000000824   32-121   B3 DNA binding domain  
CGD0010162   0.00000000112   3-94   B3 DNA binding domain  
CGD0010163   0.000000000102   5-94   B3 DNA binding domain  
CGD0010164   0.00000000549   6-94   B3 DNA binding domain  
CGD0010166   0.0000000000255   5-94   B3 DNA binding domain  
CGD0010168   0.000000000177   5-94   B3 DNA binding domain  
CGD0010169   0.0000000000000314   59-152   B3 DNA binding domain  
CGD0010182   0.00000000000167   4-89   B3 DNA binding domain  
  0.00000000471   252-312   B3 DNA binding domain  
CGD0010184   0.000000000000216   4-94   B3 DNA binding domain  
CGD0010186   0.0000000000000275   3-93   B3 DNA binding domain  
CGD0010187   0.00000000000011   3-90   B3 DNA binding domain  
CGD0010188   0.00000000000000222   3-92   B3 DNA binding domain  
CGD0010192   0.00000000106   14-80   B3 DNA binding domain  
CGD0012780   1.19e-31   190-295   B3 DNA binding domain  
CGD0014976   8.63e-38   156-301   B3 DNA binding domain  
CGD0015802   3.27e-40   135-271   B3 DNA binding domain  
CGD0016307   2.62e-18   150-244   B3 DNA binding domain  
CGD0016552   5.76e-30   116-224   B3 DNA binding domain  
CGD0016694   0.0000000000000902   201-310   B3 DNA binding domain  
CGD0016695   0.000000000011   148-257   B3 DNA binding domain  
CGD0016699   0.000000124   9-65   B3 DNA binding domain  
CGD0017295   0.0000000000275   17-125   B3 DNA binding domain  
CGD0017300   0.000000000000139   24-111   B3 DNA binding domain  
CGD0017301   0.000000000687   19-120   B3 DNA binding domain  
CGD0017302   0.0000000000196   31-96   B3 DNA binding domain  
CGD0017518   1.53e-20   92-188   B3 DNA binding domain  
CGD0017630   1.61e-21   23-121   B3 DNA binding domain  
CGD0017728   4.05e-31   111-186   B3 DNA binding domain  
CGD0018192   7.85e-20   318-420   B3 DNA binding domain  
CGD0018315   4.19e-27   164-260   B3 DNA binding domain  
CGD0019156   3.61e-22   764-905   B3 DNA binding domain  
CGD0019161   0.0000000000000235   64-136   B3 DNA binding domain  
CGD0021047   4.58e-31   47-152   B3 DNA binding domain  
CGD0021353   4.71e-41   83-221   B3 DNA binding domain  
CGD0021390   0.0000000019   2-108   B3 DNA binding domain  
CGD0021612   5.49e-30   115-228   B3 DNA binding domain  
CGD0022611   2.75e-27   260-355   B3 DNA binding domain  
CGD0024739   1.44e-28   115-240   B3 DNA binding domain  
CGD0026067   2.09e-19   352-451   B3 DNA binding domain  
CGD0026193   5.36e-19   280-372   B3 DNA binding domain  
CGD0026208   1.31e-42   149-266   B3 DNA binding domain  
CGD0026511   4.45e-49   154-298   B3 DNA binding domain  
CGD0026648   0.000000000687   310-400   B3 DNA binding domain  
CGD0026652   0.0000000000471   3-92   B3 DNA binding domain  
CGD0026654   0.00000000000981   2-93   B3 DNA binding domain  
CGD0026655   0.00000000000000961   3-91   B3 DNA binding domain  
CGD0026657   0.0000000000000981   3-94   B3 DNA binding domain  
CGD0026999   0.00000000000000615   385-483   B3 DNA binding domain  
CGD0027009   0.00000654   3-103   B3 DNA binding domain  
CGD0027589   9.61e-19   3-104   B3 DNA binding domain  
  0.00000000135   279-370   B3 DNA binding domain  
CGD0027593   0.00000000102   273-323   B3 DNA binding domain  
CGD0027597   0.000000000000765   3-95   B3 DNA binding domain  
CGD0027599   0.0000000000687   7-80   B3 DNA binding domain  
CGD0028872   4.51e-17   97-202   B3 DNA binding domain  
CGD0029423   1.31e-29   196-316   B3 DNA binding domain  
CGD0030065   1.96e-46   136-278   B3 DNA binding domain  
CGD0030266   4.71e-25   222-324   B3 DNA binding domain  
  7.26e-25   430-530   B3 DNA binding domain  
  8.24e-23   7-103   B3 DNA binding domain  
CGD0030287   2.94e-19   31-123   B3 DNA binding domain  
  5.89e-18   279-368   B3 DNA binding domain  
CGD0030333   8.63e-24   123-220   B3 DNA binding domain  
CGD0030468   0.000000000173   125-233   B3 DNA binding domain  
CGD0031129   0.00000000000000883   112-210   B3 DNA binding domain  
CGD0031374   3.14e-44   116-255   B3 DNA binding domain  
CGD0031932   1.94e-22   128-225   B3 DNA binding domain  
  3.53e-16   14-87   B3 DNA binding domain  
CGD0032708   4.19e-43   128-266   B3 DNA binding domain  
CGD0033069   4.19e-26   169-268   B3 DNA binding domain  
CGD0033929   2.62e-44   158-279   B3 DNA binding domain  
CGD0034704   1.31e-28   109-217   B3 DNA binding domain  
CGD0034877   1.19e-20   330-433   B3 DNA binding domain  
 
Weak hits:
CGD0004986   0.000785   167-265   B3 DNA binding domain  
CGD0004990   0.000231   158-256   B3 DNA binding domain  
CGD0005066   0.000902   164-259   B3 DNA binding domain  
CGD0005067   0.00051   163-259   B3 DNA binding domain  
CGD0008101   0.0863   29-73   B3 DNA binding domain  
CGD0010190   0.00049   40-80   B3 DNA binding domain  
CGD0017306   0.000804   1-68   B3 DNA binding domain  
CGD0017733   0.0177   4-43   Type II restriction endonuclease effector domain  
CGD0026660   0.0051   3-50   B3 DNA binding domain  
CGD0027409   0.00216   24-113   B3 DNA binding domain  
CGD0027667   0.000108   4-65   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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