SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


TNF receptor-like superfamily domain assignments
in
Mus musculus 63_37 (longest transcript per gene)

Assignment details

(show help)


Mus musculus 63_37 (longest transcript per gene) (Duplicate) has 45 significant domains in 23 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000122   1.11e-16   88-126   TNF receptor-like  
  0.0000000000274   34-86   TNF receptor-like  
  0.0000000000903   109-168   TNF receptor-like  
  0.000000000994   169-192   TNF receptor-like  
ENSMUSP00000010286   9.42e-18   36-80   BAFF receptor-like  
  0.0004   3-39   BAFF receptor-like  
ENSMUSP00000017799   0.00000000000032   26-79   TNF receptor-like  
  0.000000000216   82-126   TNF receptor-like  
  0.00000000141   122-161   TNF receptor-like  
ENSMUSP00000022663   0.00000000863   108-146   TNF receptor-like  
  0.000000137   63-106   TNF receptor-like  
  0.000785   147-174   TNF receptor-like  
ENSMUSP00000023140   0.000000000000247   5-40   BAFF receptor-like  
ENSMUSP00000024708   0.000000000457   106-165   TNF receptor-like  
  0.000000000571   65-109   TNF receptor-like  
ENSMUSP00000025691   0.000000000185   102-146   TNF receptor-like  
  0.0000000017   44-97   TNF receptor-like  
ENSMUSP00000025706   0.000000761   37-91   TNF receptor-like  
  0.002   99-147   TNF receptor-like  
ENSMUSP00000027559   0.000000000000628   37-88   TNF receptor-like  
  0.000000000404   111-170   TNF receptor-like  
  0.000977   172-195   TNF receptor-like  
ENSMUSP00000030336   0.00000000000178   40-95   TNF receptor-like  
  0.0000000707   117-181   TNF receptor-like  
ENSMUSP00000030510   0.00000589   497-542   TNF receptor-like  
ENSMUSP00000030808   0.0000022   60-128   TNF receptor-like  
  0.00246   135-158   TNF receptor-like  
  0.0206   27-65   TNF receptor-like  
ENSMUSP00000030952   1.02e-16   26-78   TNF receptor-like  
  0.000000000000377   79-139   TNF receptor-like  
  0.00000000102   141-164   TNF receptor-like  
ENSMUSP00000032486   0.00000000589   27-81   TNF receptor-like  
  0.000000424   80-132   TNF receptor-like  
ENSMUSP00000032489   0.0000000000000895   49-102   TNF receptor-like  
  0.00000000238   101-139,167-184   TNF receptor-like  
ENSMUSP00000032491   0.0000000000000068   101-144   TNF receptor-like  
  0.0000000000141   44-100   TNF receptor-like  
  0.000000000589   145-197   TNF receptor-like  
ENSMUSP00000041210   0.0000161   3-61   TNF receptor-like  
ENSMUSP00000045240   2.22e-16   42-96   TNF receptor-like  
  0.00000000034   95-160   TNF receptor-like  
  0.0000438   143-201   TNF receptor-like  
ENSMUSP00000054938   0.00000000000565   27-82   TNF receptor-like  
  0.0000000518   81-141   TNF receptor-like  
ENSMUSP00000075018   0.000000000000942   48-103   TNF receptor-like  
  0.00000000000969   103-163   TNF receptor-like  
ENSMUSP00000078705   0.00000000000497   103-160   TNF receptor-like  
  0.0000000000051   36-83   TNF receptor-like  
ENSMUSP00000105161   0.0000000000000073   19-48   BAFF receptor-like  
ENSMUSP00000116742   0.00000000000216   38-93   TNF receptor-like  
  0.0000000000801   93-153   TNF receptor-like  
 
Weak hits:
ENSMUSP00000008462   0.000392   37-71   TNF receptor-like  
ENSMUSP00000017339   0.0134   275-314   TNF receptor-like  
ENSMUSP00000020062   0.000235   520-565   TNF receptor-like  
ENSMUSP00000029406   0.0412   545-593   TNF receptor-like  
ENSMUSP00000030339   0.000765   90-125   TNF receptor-like  
ENSMUSP00000030792   0.00965   496-540   TNF receptor-like  
ENSMUSP00000036551   0.0231   500-547   TNF receptor-like  
ENSMUSP00000037255   0.0636   519-565   TNF receptor-like  
ENSMUSP00000052977   0.00377   504-554   TNF receptor-like  
ENSMUSP00000069647   0.0165   496-543   TNF receptor-like  
ENSMUSP00000070239   0.00199   1441-1492   TNF receptor-like  
ENSMUSP00000072296   0.0118   512-559   TNF receptor-like  
ENSMUSP00000072566   0.01   512-550   TNF receptor-like  
ENSMUSP00000074476   0.0165   496-543   TNF receptor-like  
ENSMUSP00000074602   0.0235   520-565   TNF receptor-like  
ENSMUSP00000074613   0.0129   512-559   TNF receptor-like  
ENSMUSP00000075833   0.01   512-550   TNF receptor-like  
ENSMUSP00000076657   0.000981   44-92   TNF receptor-like  
  0.00863   109-140   TNF receptor-like  
ENSMUSP00000076687   0.0259   508-554   TNF receptor-like  
ENSMUSP00000078162   0.0636   507-554   TNF receptor-like  
ENSMUSP00000079827   0.00247   512-551   TNF receptor-like  
ENSMUSP00000083277   0.0659   10-50   TNF receptor-like  
ENSMUSP00000083386   0.0235   441-489   TNF receptor-like  
ENSMUSP00000083463   0.0235   512-559   TNF receptor-like  
ENSMUSP00000083468   0.0118   512-559   TNF receptor-like  
ENSMUSP00000083477   0.0224   512-559   TNF receptor-like  
ENSMUSP00000083478   0.0424   496-543   TNF receptor-like  
ENSMUSP00000092079   0.0518   506-555   TNF receptor-like  
ENSMUSP00000092459   0.0118   512-559   TNF receptor-like  
ENSMUSP00000092460   0.01   512-550   TNF receptor-like  
ENSMUSP00000092462   0.0235   512-559   TNF receptor-like  
ENSMUSP00000093612   0.0016   501-553   TNF receptor-like  
ENSMUSP00000104190   0.0235   512-559   TNF receptor-like  
ENSMUSP00000104194   0.0129   512-559   TNF receptor-like  
ENSMUSP00000113277   0.0212   81-111   TNF receptor-like  
ENSMUSP00000122645   0.0191   507-553   TNF receptor-like  
ENSMUSP00000125817   0.0195   515-561   TNF receptor-like  
ENSMUSP00000126007   0.00777   507-554   TNF receptor-like  
ENSMUSP00000126596   0.00471   506-556   TNF receptor-like  
ENSMUSP00000126650   0.0235   515-561   TNF receptor-like  
ENSMUSP00000126698   0.0753   507-553   TNF receptor-like  
ENSMUSP00000126863   0.00859   512-559   TNF receptor-like  
ENSMUSP00000126953   0.0125   505-555   TNF receptor-like  
ENSMUSP00000126973   0.0353   510-556   TNF receptor-like  
ENSMUSP00000126979   0.04   443-489   TNF receptor-like  
ENSMUSP00000127146   0.00859   512-559   TNF receptor-like  
ENSMUSP00000127309   0.0129   513-559   TNF receptor-like  
ENSMUSP00000127337   0.00965   515-562   TNF receptor-like  
ENSMUSP00000127505   0.00282   511-558   TNF receptor-like  
ENSMUSP00000127838   0.0021   508-557   TNF receptor-like  
ENSMUSP00000128015   0.0306   507-555   TNF receptor-like  
ENSMUSP00000128102   0.0129   512-559   TNF receptor-like  
ENSMUSP00000128333   0.0162   514-562   TNF receptor-like  
ENSMUSP00000128337   0.00644   512-559   TNF receptor-like  
ENSMUSP00000128600   0.0051   453-489   TNF receptor-like  
ENSMUSP00000128792   0.00424   506-556   TNF receptor-like  
ENSMUSP00000129068   0.0193   517-563   TNF receptor-like  
ENSMUSP00000129181   0.00918   506-552   TNF receptor-like  
ENSMUSP00000129215   0.00073   504-556   TNF receptor-like  
ENSMUSP00000129313   0.0129   514-561   TNF receptor-like  
ENSMUSP00000129411   0.0306   507-554   TNF receptor-like  
ENSMUSP00000129466   0.00953   512-559   TNF receptor-like  
ENSMUSP00000129520   0.00942   502-555   TNF receptor-like  
ENSMUSP00000129540   0.011   510-556   TNF receptor-like  
ENSMUSP00000129566   0.0918   440-486   TNF receptor-like  
ENSMUSP00000130114   0.000541   518-564   TNF receptor-like  
ENSMUSP00000130160   0.0118   512-559   TNF receptor-like  
ENSMUSP00000130631   0.00651   515-562   TNF receptor-like  
ENSMUSP00000130850   0.0659   10-50   TNF receptor-like  
ENSMUSP00000131447   0.00989   512-559   TNF receptor-like  
ENSMUSP00000131450   0.00989   507-556   TNF receptor-like  
ENSMUSP00000131780   0.00965   515-562   TNF receptor-like  
ENSMUSP00000131925   0.0471   457-505   TNF receptor-like  
ENSMUSP00000131990   0.0129   512-559   TNF receptor-like  
ENSMUSP00000132299   0.000942   518-564   TNF receptor-like  
ENSMUSP00000132327   0.00859   512-559   TNF receptor-like  
ENSMUSP00000132332   0.00651   515-562   TNF receptor-like  
ENSMUSP00000132337   0.00636   511-557   TNF receptor-like  
ENSMUSP00000132457   0.00965   515-562   TNF receptor-like  
ENSMUSP00000132467   0.00848   512-559   TNF receptor-like  
ENSMUSP00000132478   0.0377   507-553   TNF receptor-like  
ENSMUSP00000132539   0.00859   512-559   TNF receptor-like  
ENSMUSP00000132726   0.00188   507-553   TNF receptor-like  
ENSMUSP00000133007   0.00141   512-559   TNF receptor-like  
ENSMUSP00000133014   0.0155   513-559   TNF receptor-like  
ENSMUSP00000133218   0.00706   520-568   TNF receptor-like  
ENSMUSP00000133265   0.00644   512-559   TNF receptor-like  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a TNF receptor-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   36495 36495
No Yes Homo sapiens 76_38 Human 153 80
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 46 20
No Yes Gorilla gorilla 76_3.1 Western gorilla 66 31
No Yes Pongo abelii 76_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 38 20
No Yes Papio anubis 76 Olive baboon 53 24
No Yes Macaca mulatta 76_1 Rhesus monkey 74 35
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 93 48
No Yes Otolemur garnettii 76_3 Small-eared galago 40 19
No Yes Microcebus murinus 76_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 76_5.0 Norway rat 47 26
No Yes Mus musculus 76_38 House mouse 88 53
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 42 20
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 37 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 49 24
No Yes Oryctolagus cuniculus 76_2 Rabbit 37 20
No Yes Ochotona princeps 76 American pika 29 15
No Yes Tupaia belangeri 76 Northern tree shrew 26 15
No Yes Sus scrofa 76_10.2 Pig 78 40
No Yes Bos taurus 76_3.1 Cattle 53 24
No Yes Ovis aries 76_3.1 Sheep 42 23
No Yes Vicugna pacos 76_1 Alpaca 10 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 76_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 76_1 Giant panda 42 20
No Yes Canis familiaris 76_3.1 Dog 54 27
No Yes Felis catus 76_6.2 Domestic cat 42 22
No Yes Equus caballus 76_2 Horse 49 23
No Yes Myotis lucifugus 76_2.0 Little brown bat 51 23
No Yes Pteropus vampyrus 76_1 Large flying fox 35 20
No Yes Sorex araneus 76_1 European shrew 8 6
No Yes Erinaceus europaeus 76 Western European hedgehog 13 9
No Yes Procavia capensis 76_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 76_3 African savanna elephant 57 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 44 21
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 52 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 44 22
No Yes Ornithorhynchus anatinus 76_5 Platypus 35 18
No Yes Saccoglossus kowalevskii v3.0   30 21
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 76_2 Turkey 37 19
No Yes Gallus gallus 76_4 Chicken 32 18
No Yes Anas platyrhynchos 76_1.0 Mallard 38 18
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 32 18
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 42 22
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 34 19
No Yes Anolis carolinensis 76_2.0 Green anole 28 15
No Yes Xenopus laevis African clawed frog 57 26
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 31 15
No Yes Latimeria chalumnae 76_1 Coelacanth 45 24
No Yes Lepisosteus oculatus 76 Spotted gar 53 30
No Yes Gadus morhua 76_1 Atlantic cod 84 40
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 16
No Yes Takifugu rubripes 76_4 Torafugu 87 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 47 26
No Yes Oryzias latipes 76_1 Japanese medaka 46 24
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 49 27
No Yes Poecilia formosa 76 Amazon molly 52 26
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 76 34
No Yes Astyanax mexicanus 76 Mexican tetra 49 24
No Yes Danio rerio 76_9 Zebrafish 94 44
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 8 6
No Yes Adineta vaga   1 1
No Yes Octopus bimaculoides 280   3 2
No Yes Crassostrea gigas 22 Pacific oyster 9 7
No Yes Lottia gigantea Owl limpet 30 17
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   6 4
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Daphnia pulex Common water flea 2 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Pristionchus pacificus   1 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   2 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   8 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 8
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   76 37
No Yes Monosiga brevicollis   21 13
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanophora paradoxa   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Tetrahymena thermophila SB210 1   5 5
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Sorangium cellulosum 'So ce 56'   3 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 47 22
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 136 74
No Yes Homo sapiens (NCBI version) Human 69 33
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 45 23
No Yes Homo sapiens 69_37 Human 52 24
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 45 19
No Yes Gorilla gorilla 69_3.1 Western gorilla 47 22
No Yes Pongo abelii 69_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 38 20
No Yes Macaca mulatta 69_1 Rhesus monkey 47 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 44 22
No Yes Otolemur garnettii 69_3 Small-eared galago 38 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 69_3.4 Norway rat 46 25
No Yes Mus musculus 69_38 House mouse 45 23
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 36 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 23
No Yes Oryctolagus cuniculus 69_2 Rabbit 34 19
No Yes Ochotona princeps 69 American pika 29 15
No Yes Tupaia belangeri 69 Northern tree shrew 26 15
No Yes Sus scrofa 69_10.2 Pig 51 24
No Yes Bos taurus 69_3.1 Cattle 48 22
No Yes Vicugna pacos 69_1 Alpaca 10 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 69_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 69_1 Giant panda 39 18
No Yes Canis familiaris 69_3.1 Dog 39 19
No Yes Felis catus 69 Domestic cat 31 17
No Yes Equus caballus 69_2 Horse 42 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 49 22
No Yes Pteropus vampyrus 69_1 Large flying fox 35 20
No Yes Sorex araneus 69_1 European shrew 8 6
No Yes Erinaceus europaeus 69 Western European hedgehog 13 9
No Yes Procavia capensis 69_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 69_3 African savanna elephant 41 21
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 7
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 42 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 33 18
No Yes Ornithorhynchus anatinus 69_5 Platypus 31 16
No Yes Petromyzon marinus 69_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 69_2 Turkey 26 14
No Yes Gallus gallus 69_2 Chicken 31 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 29 16
No Yes Anolis carolinensis 69_2.0 Green anole 22 11
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 25 12
No Yes Latimeria chalumnae 69_1 Coelacanth 37 20
No Yes Gadus morhua 69_1 Atlantic cod 34 17
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 31 15
No Yes Takifugu rubripes 69_4 Torafugu 32 15
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 38 20
No Yes Oryzias latipes 69_1 Japanese medaka 41 21
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 49 27
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 54 25
No Yes Danio rerio 69_9 Zebrafish 71 33
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16104 8391
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   1030 526
No Yes Uniprot 2018_03 genome   9605 5117
No Yes Global Ocean Sampling Expedition (GOS)   42 21
No Yes NCBI viral sequences (Viral)   85 54
No Yes PDB chains (SCOP 1.75) (PDB)   36 16
No Yes Protein Data Bank (all PDB sequenc)   411 229
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   739 703
No Yes TargetDB (Targets)   27 14
No Yes UniProt viral sequences (Viral)   451 308

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]