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  Home > Genomes > Pongo abelii 76_2 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
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Pongo abelii 76_2

Assignment details

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Pongo abelii 76_2 has 204 significant domains in 46 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000001516   0.000000119   123-156   LDL receptor-like module  
ENSPPYP00000001541   0.000000838   96-129   LDL receptor-like module  
  0.0000877   179-220   LDL receptor-like module  
  0.000157   144-173   LDL receptor-like module  
ENSPPYP00000001551   0.000000000183   288-328   LDL receptor-like module  
  0.000000000275   160-196   LDL receptor-like module  
  0.000000000825   256-290   LDL receptor-like module  
  0.000000000838   41-77   LDL receptor-like module  
  0.00000000275   80-123   LDL receptor-like module  
  0.0000000072   114-159   LDL receptor-like module  
  0.0000000196   200-240   LDL receptor-like module  
ENSPPYP00000002034   0.000000000524   261-299   LDL receptor-like module  
  0.000000000628   306-349   LDL receptor-like module  
  0.000000000759   221-258   LDL receptor-like module  
  0.000000101   137-175   LDL receptor-like module  
ENSPPYP00000002481   0.000000406   174-206   LDL receptor-like module  
ENSPPYP00000003804   0.0000000000144   303-343   LDL receptor-like module  
  0.000000000196   267-305   LDL receptor-like module  
  0.000000000353   182-222   LDL receptor-like module  
  0.000000000524   107-145   LDL receptor-like module  
  0.000000000602   348-384   LDL receptor-like module  
  0.00000000432   143-181   LDL receptor-like module  
  0.00000000654   226-264   LDL receptor-like module  
  0.00000157   65-107   LDL receptor-like module  
ENSPPYP00000003850   0.0000000000223   29-65   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
  0.000000000524   110-147   LDL receptor-like module  
ENSPPYP00000004490   0.0000916   163-187   LDL receptor-like module  
ENSPPYP00000004493   0.000000249   54-93   LDL receptor-like module  
ENSPPYP00000004543   0.00000000982   258-294   LDL receptor-like module  
  0.000000956   419-453   LDL receptor-like module  
ENSPPYP00000004559   0.0000000000209   1320-1358   LDL receptor-like module  
  0.000000000055   1099-1137   LDL receptor-like module  
  0.0000000000995   1227-1263   LDL receptor-like module  
  0.000000000223   1056-1097   LDL receptor-like module  
  0.00000000157   979-1017   LDL receptor-like module  
  0.00000000249   1274-1307   LDL receptor-like module  
  0.00000000327   1142-1175   LDL receptor-like module  
  0.0000000126   1374-1411   LDL receptor-like module  
  0.0000000249   1414-1453   LDL receptor-like module  
  0.000000109   1020-1059   LDL receptor-like module  
  0.00000301   1179-1214   LDL receptor-like module  
ENSPPYP00000004647   0.000000000223   525-559   LDL receptor-like module  
  0.000000000419   453-488   LDL receptor-like module  
  0.00000000275   491-525   LDL receptor-like module  
  0.0000014   564-604   LDL receptor-like module  
ENSPPYP00000005334   0.0000000000524   825-867   LDL receptor-like module  
  0.000000000131   3406-3446   LDL receptor-like module  
  0.00000000017   906-945   LDL receptor-like module  
  0.000000000262   3490-3535   LDL receptor-like module  
  0.000000000301   3324-3364   LDL receptor-like module  
  0.000000000301   3448-3484   LDL receptor-like module  
  0.00000000038   990-1027   LDL receptor-like module  
  0.00000000038   3206-3246   LDL receptor-like module  
  0.000000000406   866-908   LDL receptor-like module  
  0.000000000537   951-988   LDL receptor-like module  
  0.000000000537   2533-2570   LDL receptor-like module  
  0.000000000772   3368-3407   LDL receptor-like module  
  0.00000000122   3-43   LDL receptor-like module  
  0.00000000131   1034-1074   LDL receptor-like module  
  0.00000000275   2400-2440   LDL receptor-like module  
  0.00000000314   2573-2607   LDL receptor-like module  
  0.00000000327   3285-3322   LDL receptor-like module  
  0.00000000511   2655-2691   LDL receptor-like module  
  0.00000000851   2440-2479   LDL receptor-like module  
  0.0000000103   3248-3286   LDL receptor-like module  
  0.0000000123   3168-3203   LDL receptor-like module  
  0.0000000144   2693-2732   LDL receptor-like module  
  0.0000000157   2613-2647   LDL receptor-like module  
  0.0000000432   3577-3613   LDL receptor-like module  
  0.0000000608   2358-2401   LDL receptor-like module  
  0.000000209   48-83   LDL receptor-like module  
  0.000000288   1082-1117   LDL receptor-like module  
  0.00000038   1120-1155   LDL receptor-like module  
  0.0000012   2499-2529   LDL receptor-like module  
  0.0000144   3532-3568   LDL receptor-like module  
ENSPPYP00000005990   0.0000000126   40-79   LDL receptor-like module  
ENSPPYP00000006417   0.0000000000209   398-436   LDL receptor-like module  
  0.000000000183   139-176   LDL receptor-like module  
  0.000183   328-353   LDL receptor-like module  
  0.00131   356-397   LDL receptor-like module  
ENSPPYP00000007207   0.00000000497   334-372   LDL receptor-like module  
ENSPPYP00000008271   0.00000000864   296-332   LDL receptor-like module  
ENSPPYP00000010076   0.0000000759   14-48   LDL receptor-like module  
ENSPPYP00000010365   0.0000000327   290-326   LDL receptor-like module  
ENSPPYP00000010493   0.000000406   153-192   LDL receptor-like module  
ENSPPYP00000010656   0.00000000000628   53-95   LDL receptor-like module  
ENSPPYP00000010732   0.0000000000131   103-144   LDL receptor-like module  
  0.0000000000288   142-183   LDL receptor-like module  
  0.000000000102   26-70   LDL receptor-like module  
  0.000000000183   196-232   LDL receptor-like module  
  0.000000000367   234-272   LDL receptor-like module  
  0.000000000367   66-104   LDL receptor-like module  
  0.0000000798   274-311   LDL receptor-like module  
ENSPPYP00000010745   0.0000419   68-108   LDL receptor-like module  
  0.000209   31-66   LDL receptor-like module  
ENSPPYP00000011003   0.0000000000484   453-490   LDL receptor-like module  
  0.00000000017   164-201   LDL receptor-like module  
  0.0000000011   210-249   LDL receptor-like module  
  0.00000236   414-451   LDL receptor-like module  
  0.016   364-412   LDL receptor-like module  
ENSPPYP00000011945   0.00000017   231-263   LDL receptor-like module  
ENSPPYP00000012766   0.0000000759   112-149   LDL receptor-like module  
ENSPPYP00000012784   0.00000000956   97-135   LDL receptor-like module  
ENSPPYP00000012907   0.0000000000223   25-67   LDL receptor-like module  
ENSPPYP00000013149   0.0000218   410-446   LDL receptor-like module  
  0.000034   377-407   LDL receptor-like module  
ENSPPYP00000013150   0.0000218   410-446   LDL receptor-like module  
  0.0000327   377-407   LDL receptor-like module  
ENSPPYP00000013987   0.0000196   437-470   LDL receptor-like module  
ENSPPYP00000014315   0.0000000000353   3744-3784   LDL receptor-like module  
  0.000000000122   913-958   LDL receptor-like module  
  0.000000000223   956-996   LDL receptor-like module  
  0.000000000236   3618-3654   LDL receptor-like module  
  0.000000000393   878-917   LDL receptor-like module  
  0.000000000511   3539-3574   LDL receptor-like module  
  0.000000000615   2793-2829   LDL receptor-like module  
  0.000000000772   1001-1039   LDL receptor-like module  
  0.00000000089   3339-3378   LDL receptor-like module  
  0.000000000929   3660-3705   LDL receptor-like module  
  0.00000000101   3579-3616   LDL receptor-like module  
  0.00000000111   1040-1076   LDL receptor-like module  
  0.00000000118   3461-3497   LDL receptor-like module  
  0.00000000183   2877-2918   LDL receptor-like module  
  0.00000000223   1088-1124   LDL receptor-like module  
  0.00000000353   2579-2620   LDL receptor-like module  
  0.00000000353   3301-3336   LDL receptor-like module  
  0.00000000458   2713-2750   LDL receptor-like module  
  0.00000000589   3496-3536   LDL receptor-like module  
  0.00000000668   2836-2872   LDL receptor-like module  
  0.00000000838   2620-2659   LDL receptor-like module  
  0.00000000903   3422-3458   LDL receptor-like module  
  0.0000000157   3381-3418   LDL receptor-like module  
  0.0000000183   2753-2795   LDL receptor-like module  
  0.000000126   67-105   LDL receptor-like module  
  0.00000017   2544-2581   LDL receptor-like module  
  0.000000196   2673-2709   LDL receptor-like module  
  0.000000668   1170-1206   LDL receptor-like module  
  0.000000903   112-145   LDL receptor-like module  
  0.000000969   1134-1167   LDL receptor-like module  
  0.0000128   3706-3738   LDL receptor-like module  
ENSPPYP00000014409   0.0000000000124   2735-2776   LDL receptor-like module  
  0.0000000000327   1065-1103   LDL receptor-like module  
  0.0000000000537   2987-3028   LDL receptor-like module  
  0.0000000000759   3627-3666   LDL receptor-like module  
  0.0000000000995   1147-1184   LDL receptor-like module  
  0.000000000122   2857-2896   LDL receptor-like module  
  0.000000000144   1265-1306   LDL receptor-like module  
  0.000000000209   3026-3066   LDL receptor-like module  
  0.000000000314   3510-3546   LDL receptor-like module  
  0.000000000406   3718-3755   LDL receptor-like module  
  0.000000000445   3069-3109   LDL receptor-like module  
  0.000000000602   103-147   LDL receptor-like module  
  0.000000000812   26-63   LDL receptor-like module  
  0.00000000106   3758-3795   LDL receptor-like module  
  0.0000000011   2699-2742   LDL receptor-like module  
  0.00000000144   3793-3833   LDL receptor-like module  
  0.00000000144   2904-2939   LDL receptor-like module  
  0.00000000157   182-217   LDL receptor-like module  
  0.0000000017   1106-1143   LDL receptor-like module  
  0.00000000196   1023-1060   LDL receptor-like module  
  0.00000000209   3841-3876   LDL receptor-like module  
  0.00000000236   216-256   LDL receptor-like module  
  0.0000000034   3585-3629   LDL receptor-like module  
  0.00000000589   1186-1224   LDL receptor-like module  
  0.00000000838   1229-1265   LDL receptor-like module  
  0.0000000109   3926-3962   LDL receptor-like module  
  0.0000000115   65-101   LDL receptor-like module  
  0.0000000209   3547-3588   LDL receptor-like module  
  0.0000000249   2820-2859   LDL receptor-like module  
  0.0000000327   264-300   LDL receptor-like module  
  0.0000000681   1310-1346   LDL receptor-like module  
  0.0000000798   3882-3920   LDL receptor-like module  
  0.000000275   2943-2986   LDL receptor-like module  
  0.000000432   3681-3714   LDL receptor-like module  
  0.00000249   146-180   LDL receptor-like module  
  0.00000982   2783-2817   LDL receptor-like module  
ENSPPYP00000015155   0.0000000000157   212-257   LDL receptor-like module  
  0.0000000851   287-326   LDL receptor-like module  
  0.0000236   246-282   LDL receptor-like module  
ENSPPYP00000016746   0.000000000524   233-270   LDL receptor-like module  
  0.0000000314   198-231   LDL receptor-like module  
ENSPPYP00000016938   0.000000209   48-85   LDL receptor-like module  
ENSPPYP00000017221   0.00000128   103-134   LDL receptor-like module  
ENSPPYP00000017232   0.0000957   78-119   LDL receptor-like module  
ENSPPYP00000017235   0.0000000157   141-173   LDL receptor-like module  
ENSPPYP00000019141   0.00000000942   254-291   LDL receptor-like module  
ENSPPYP00000021104   0.000000000017   450-488   LDL receptor-like module  
  0.00000000209   164-200   LDL receptor-like module  
  0.00000013   411-449   LDL receptor-like module  
  0.000000144   212-254   LDL receptor-like module  
  0.000000733   374-411   LDL receptor-like module  
ENSPPYP00000021562   0.00000000000223   234-273   LDL receptor-like module  
  0.00000000000301   31-68   LDL receptor-like module  
  0.000000000017   149-188   LDL receptor-like module  
  0.0000000000419   272-312   LDL receptor-like module  
  0.00000000038   70-108   LDL receptor-like module  
  0.000000000982   187-225   LDL receptor-like module  
  0.00000000262   107-149   LDL receptor-like module  
  0.0000000406   318-355   LDL receptor-like module  
ENSPPYP00000022189   0.0000000288   113-152   LDL receptor-like module  
  0.000288   344-383   LDL receptor-like module  
ENSPPYP00000024153   0.000000000393   809-847   LDL receptor-like module  
  0.000000000733   730-770   LDL receptor-like module  
  0.00000000249   771-807   LDL receptor-like module  
ENSPPYP00000024571   0.0000000327   291-327   LDL receptor-like module  
ENSPPYP00000024629   0.000000000812   383-424   LDL receptor-like module  
  0.00000000157   306-343   LDL receptor-like module  
  0.00000000209   342-380   LDL receptor-like module  
  0.00000000746   269-306   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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