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LDL receptor-like module superfamily domain assignments
in
Sus scrofa 76_10.2

Assignment details

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Sus scrofa 76_10.2 has 167 significant domains in 58 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000000451   0.0000000000131   839-878   LDL receptor-like module  
  0.0000000000851   880-916   LDL receptor-like module  
  0.000000000106   922-967   LDL receptor-like module  
  0.000000000144   638-682   LDL receptor-like module  
  0.00000000183   720-755   LDL receptor-like module  
  0.00000000393   680-718   LDL receptor-like module  
  0.00000000772   601-636   LDL receptor-like module  
  0.0000000236   1010-1045   LDL receptor-like module  
  0.00000011   757-792   LDL receptor-like module  
  0.000000314   27-62   LDL receptor-like module  
  0.00000746   964-1000   LDL receptor-like module  
  0.0000115   1-25   LDL receptor-like module  
ENSSSCP00000000656   0.00000000123   1104-1142   LDL receptor-like module  
  0.00000000128   1182-1220   LDL receptor-like module  
  0.0000000034   1144-1180   LDL receptor-like module  
ENSSSCP00000003083   0.0000000000458   454-491   LDL receptor-like module  
  0.00000000017   164-201   LDL receptor-like module  
  0.0000000012   210-249   LDL receptor-like module  
  0.00000223   415-452   LDL receptor-like module  
  0.00118   365-413   LDL receptor-like module  
ENSSSCP00000004150   0.0000000654   135-168   LDL receptor-like module  
ENSSSCP00000004164   0.000000000406   161-196   LDL receptor-like module  
  0.000000000432   291-328   LDL receptor-like module  
  0.000000000511   40-76   LDL receptor-like module  
  0.00000000109   254-289   LDL receptor-like module  
  0.0000000017   80-122   LDL receptor-like module  
  0.00000000733   200-235   LDL receptor-like module  
  0.0000000123   114-159   LDL receptor-like module  
ENSSSCP00000004434   0.00000000367   309-346   LDL receptor-like module  
ENSSSCP00000005131   0.0000000183   309-347   LDL receptor-like module  
ENSSSCP00000005621   0.00000000000223   234-273   LDL receptor-like module  
  0.0000000000034   32-68   LDL receptor-like module  
  0.0000000000144   148-188   LDL receptor-like module  
  0.0000000000393   272-312   LDL receptor-like module  
  0.000000000432   70-108   LDL receptor-like module  
  0.000000000903   187-225   LDL receptor-like module  
  0.00000000236   107-149   LDL receptor-like module  
  0.0000000353   318-355   LDL receptor-like module  
ENSSSCP00000006241   0.0000000249   225-263   LDL receptor-like module  
  0.0000903   460-497   LDL receptor-like module  
ENSSSCP00000006452   0.000000000017   450-488   LDL receptor-like module  
  0.00000000275   164-200   LDL receptor-like module  
  0.00000013   411-449   LDL receptor-like module  
  0.000000223   212-254   LDL receptor-like module  
  0.000000733   374-411   LDL receptor-like module  
ENSSSCP00000009394   0.00000000419   651-688   LDL receptor-like module  
  0.0000000111   413-451   LDL receptor-like module  
  0.0000000144   340-377   LDL receptor-like module  
  0.0000000209   376-413   LDL receptor-like module  
  0.0000000209   725-764   LDL receptor-like module  
  0.000000106   450-485   LDL receptor-like module  
  0.000000654   691-723   LDL receptor-like module  
ENSSSCP00000009467   0.00000017   38-75   LDL receptor-like module  
ENSSSCP00000009744   0.00000000157   257-292   LDL receptor-like module  
  0.0000000694   220-254   LDL receptor-like module  
ENSSSCP00000010784   0.0000000000471   24-64   LDL receptor-like module  
ENSSSCP00000012801   0.000000000262   492-530   LDL receptor-like module  
  0.000000537   34-72   LDL receptor-like module  
ENSSSCP00000012860   0.00000000262   115-152   LDL receptor-like module  
ENSSSCP00000013700   0.00000000038   808-846   LDL receptor-like module  
  0.00000000262   770-805   LDL receptor-like module  
  0.00000000367   730-768   LDL receptor-like module  
ENSSSCP00000014076   0.0000000000301   257-297   LDL receptor-like module  
  0.000000000249   136-176   LDL receptor-like module  
  0.000000000262   221-259   LDL receptor-like module  
  0.000000000785   302-338   LDL receptor-like module  
  0.00000000236   100-135   LDL receptor-like module  
  0.00000000262   59-97   LDL receptor-like module  
  0.00000000641   180-218   LDL receptor-like module  
  0.00000157   19-61   LDL receptor-like module  
ENSSSCP00000014126   0.0000000000223   29-65   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
  0.000000000524   110-147   LDL receptor-like module  
ENSSSCP00000014481   0.0000106   67-107   LDL receptor-like module  
  0.000262   30-65   LDL receptor-like module  
ENSSSCP00000016009   0.000000681   53-90   LDL receptor-like module  
ENSSSCP00000016042   0.0000000113   246-282   LDL receptor-like module  
  0.000812   408-441   LDL receptor-like module  
ENSSSCP00000016058   0.0000000000144   248-285   LDL receptor-like module  
  0.0000000000327   28-67   LDL receptor-like module  
  0.0000000000497   155-191   LDL receptor-like module  
  0.000000000707   70-103   LDL receptor-like module  
  0.00000000072   200-235   LDL receptor-like module  
  0.00000000314   345-382   LDL receptor-like module  
  0.00000000694   302-339   LDL receptor-like module  
  0.00000111   107-142   LDL receptor-like module  
  0.00000144   1-26   LDL receptor-like module  
ENSSSCP00000016170   0.000000000353   488-525   LDL receptor-like module  
  0.0000000017   525-559   LDL receptor-like module  
  0.00000000314   453-488   LDL receptor-like module  
ENSSSCP00000016881   0.00000000000157   2-39   LDL receptor-like module  
  0.0000000000432   128-167   LDL receptor-like module  
  0.000000000072   45-81   LDL receptor-like module  
  0.0000000123   87-125   LDL receptor-like module  
ENSSSCP00000017860   0.000000123   75-107   LDL receptor-like module  
ENSSSCP00000017865   0.0000589   78-119   LDL receptor-like module  
ENSSSCP00000017868   0.00000000497   141-173   LDL receptor-like module  
ENSSSCP00000019459   0.0000000144   79-115   LDL receptor-like module  
ENSSSCP00000019471   0.000000314   529-568   LDL receptor-like module  
  0.000000576   493-524   LDL receptor-like module  
  0.0000249   458-490   LDL receptor-like module  
ENSSSCP00000019849   0.00000000812   287-325   LDL receptor-like module  
ENSSSCP00000020191   0.0000000118   298-334   LDL receptor-like module  
ENSSSCP00000020288   0.0000000589   76-112   LDL receptor-like module  
  0.000017   162-203   LDL receptor-like module  
  0.0000877   127-155   LDL receptor-like module  
ENSSSCP00000021086   0.0000000123   298-334   LDL receptor-like module  
ENSSSCP00000021137   0.0000000000157   112-149   LDL receptor-like module  
  0.0000000000772   152-186   LDL receptor-like module  
  0.000000000131   18-58   LDL receptor-like module  
  0.000000000314   234-270   LDL receptor-like module  
  0.000000000471   192-226   LDL receptor-like module  
  0.0000000419   77-108   LDL receptor-like module  
  0.000533   272-299   LDL receptor-like module  
  0.000576   2-19   LDL receptor-like module  
ENSSSCP00000021307   0.0000288   48-71   LDL receptor-like module  
ENSSSCP00000021308   0.000000000445   3-41   LDL receptor-like module  
  0.000000969   43-75   LDL receptor-like module  
ENSSSCP00000021724   0.00000000000995   113-149   LDL receptor-like module  
  0.00000000445   24-62   LDL receptor-like module  
  0.0000000262   152-181   LDL receptor-like module  
ENSSSCP00000021973   0.000000034   92-130   LDL receptor-like module  
ENSSSCP00000022143   0.0000119   141-180   LDL receptor-like module  
ENSSSCP00000022247   0.00000000038   808-846   LDL receptor-like module  
  0.00000000262   770-805   LDL receptor-like module  
  0.00000000367   730-768   LDL receptor-like module  
ENSSSCP00000023085   0.0000000000236   11-50   LDL receptor-like module  
  0.0000000000288   52-89   LDL receptor-like module  
  0.0000000000393   94-139   LDL receptor-like module  
  0.00000000903   182-217   LDL receptor-like module  
  0.00000288   136-172   LDL receptor-like module  
ENSSSCP00000023250   0.000000038   132-170   LDL receptor-like module  
ENSSSCP00000023884   0.000000034   31-68   LDL receptor-like module  
  0.0000113   118-159   LDL receptor-like module  
  0.0000589   83-111   LDL receptor-like module  
ENSSSCP00000024110   0.000000262   287-325   LDL receptor-like module  
ENSSSCP00000024236   0.0000831   1-31   LDL receptor-like module  
ENSSSCP00000024880   0.000000314   528-567   LDL receptor-like module  
  0.000000576   492-523   LDL receptor-like module  
  0.0000249   457-489   LDL receptor-like module  
ENSSSCP00000025042   0.00000000497   18-56   LDL receptor-like module  
ENSSSCP00000025257   0.0000000367   7-42   LDL receptor-like module  
ENSSSCP00000026230   0.000000034   14-48   LDL receptor-like module  
ENSSSCP00000026687   0.0000000000511   137-174   LDL receptor-like module  
  0.0000668   319-344   LDL receptor-like module  
  0.0000969   389-419   LDL receptor-like module  
  0.00367   346-388   LDL receptor-like module  
ENSSSCP00000026811   0.0000000000484   475-512   LDL receptor-like module  
  0.000000000183   185-222   LDL receptor-like module  
  0.00000000124   231-270   LDL receptor-like module  
  0.00000236   436-473   LDL receptor-like module  
  0.00121   386-434   LDL receptor-like module  
ENSSSCP00000027178   0.00000000000733   467-505   LDL receptor-like module  
  0.00000183   544-583   LDL receptor-like module  
  0.000209   503-539   LDL receptor-like module  
ENSSSCP00000027870   0.000000275   294-332   LDL receptor-like module  
ENSSSCP00000028492   0.0000000379   8-43   LDL receptor-like module  
ENSSSCP00000029927   0.00000000183   274-309   LDL receptor-like module  
  0.0000000707   237-271   LDL receptor-like module  
ENSSSCP00000030589   0.00000000000301   142-184   LDL receptor-like module  
  0.0000000000157   104-144   LDL receptor-like module  
  0.0000000000183   197-233   LDL receptor-like module  
  0.0000000000471   26-62   LDL receptor-like module  
  0.000000000103   62-104   LDL receptor-like module  
ENSSSCP00000030683   0.0000000000353   627-667   LDL receptor-like module  
  0.0000000000654   669-705   LDL receptor-like module  
  0.0000000000877   711-756   LDL receptor-like module  
  0.00000000012   427-467   LDL receptor-like module  
  0.00000000017   545-586   LDL receptor-like module  
  0.000000000288   589-628   LDL receptor-like module  
  0.000000000969   506-543   LDL receptor-like module  
  0.0000000034   469-507   LDL receptor-like module  
  0.00000000393   390-424   LDL receptor-like module  
  0.0000000196   799-834   LDL receptor-like module  
  0.00000641   753-789   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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