SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


TSP-1 type 1 repeat superfamily domain assignments
in
Bos taurus 76_3.1

Assignment details

(show help)


Bos taurus 76_3.1 has 315 significant domains in 70 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000000849   0.000000000000122   571-625   TSP-1 type 1 repeat  
  0.00000017   878-934   TSP-1 type 1 repeat  
ENSBTAP00000000944   3.66e-16   560-616   TSP-1 type 1 repeat  
  0.000000000222   910-969   TSP-1 type 1 repeat  
  0.000000000458   858-912   TSP-1 type 1 repeat  
ENSBTAP00000000946   0.0000131   207-252   TSP-1 type 1 repeat  
ENSBTAP00000001339   8.24e-17   587-644   TSP-1 type 1 repeat  
  0.000000000183   1129-1179   TSP-1 type 1 repeat  
  0.00000000196   991-1050   TSP-1 type 1 repeat  
  0.00000000405   932-992   TSP-1 type 1 repeat  
  0.000000353   1057-1116   TSP-1 type 1 repeat  
ENSBTAP00000002600   2.75e-17   491-543   TSP-1 type 1 repeat  
  3.53e-16   435-484   TSP-1 type 1 repeat  
  0.0000000000327   379-428   TSP-1 type 1 repeat  
ENSBTAP00000002689   0.0000157   207-250   TSP-1 type 1 repeat  
ENSBTAP00000003651   0.000000000615   126-177   TSP-1 type 1 repeat  
ENSBTAP00000004113   0.000000000000262   587-643   TSP-1 type 1 repeat  
  0.0000000000628   1108-1166   TSP-1 type 1 repeat  
  0.000000000068   1385-1444   TSP-1 type 1 repeat  
  0.00000000235   1558-1618   TSP-1 type 1 repeat  
  0.00000000249   1686-1735   TSP-1 type 1 repeat  
  0.00000000262   1621-1681   TSP-1 type 1 repeat  
  0.00000000811   1051-1109   TSP-1 type 1 repeat  
  0.00000000902   994-1054   TSP-1 type 1 repeat  
  0.00000000929   1332-1388   TSP-1 type 1 repeat  
  0.0000000101   1239-1300   TSP-1 type 1 repeat  
  0.0000000157   1449-1503   TSP-1 type 1 repeat  
  0.0000000392   1189-1244   TSP-1 type 1 repeat  
  0.0000000837   1501-1559   TSP-1 type 1 repeat  
ENSBTAP00000004686   0.00000000109   44-79   TSP-1 type 1 repeat  
  0.00000000249   970-1021   TSP-1 type 1 repeat  
  0.00000000432   778-836   TSP-1 type 1 repeat  
  0.00000000981   908-966   TSP-1 type 1 repeat  
  0.0000000196   720-778   TSP-1 type 1 repeat  
  0.000000863   840-904   TSP-1 type 1 repeat  
  0.000085   663-718   TSP-1 type 1 repeat  
ENSBTAP00000004913   0.0000000000693   544-589   TSP-1 type 1 repeat  
  0.0000628   40-88   TSP-1 type 1 repeat  
ENSBTAP00000004914   0.00000497   63-111   TSP-1 type 1 repeat  
ENSBTAP00000005002   0.0000379   147-200   TSP-1 type 1 repeat  
ENSBTAP00000005582   0.0000000157   278-326   TSP-1 type 1 repeat  
ENSBTAP00000006101   0.0000000000497   646-699   TSP-1 type 1 repeat  
  0.000000000327   357-417   TSP-1 type 1 repeat  
  0.000000000419   510-564   TSP-1 type 1 repeat  
  0.00000000876   1431-1489   TSP-1 type 1 repeat  
  0.0000000458   699-759   TSP-1 type 1 repeat  
  0.0000000536   13-61   TSP-1 type 1 repeat  
  0.0000000889   758-820   TSP-1 type 1 repeat  
  0.000000693   412-473   TSP-1 type 1 repeat  
  0.00000327   279-339   TSP-1 type 1 repeat  
  0.00000379   1548-1603   TSP-1 type 1 repeat  
  0.00000641   587-643   TSP-1 type 1 repeat  
ENSBTAP00000006610   4.32e-17   727-785   TSP-1 type 1 repeat  
  0.00000000000000183   672-728   TSP-1 type 1 repeat  
  0.00000000000000419   485-535   TSP-1 type 1 repeat  
  0.000000000445   540-591   TSP-1 type 1 repeat  
  0.0000000392   786-831   TSP-1 type 1 repeat  
  0.00000196   429-482   TSP-1 type 1 repeat  
ENSBTAP00000007931   0.0000129   193-237   TSP-1 type 1 repeat  
ENSBTAP00000008357   0.00000109   198-242   TSP-1 type 1 repeat  
ENSBTAP00000008376   0.0000000000000405   400-456   TSP-1 type 1 repeat  
  0.000000000000615   514-569   TSP-1 type 1 repeat  
  0.00000000000116   461-511   TSP-1 type 1 repeat  
  0.0000000000288   348-397   TSP-1 type 1 repeat  
  0.000000000105   256-305   TSP-1 type 1 repeat  
ENSBTAP00000009855   0.0000000000667   852-910   TSP-1 type 1 repeat  
  0.0000000105   45-104   TSP-1 type 1 repeat  
  0.0000000115   743-797   TSP-1 type 1 repeat  
  0.0000000131   622-688   TSP-1 type 1 repeat  
  0.000000314   797-857   TSP-1 type 1 repeat  
  0.00000876   565-625   TSP-1 type 1 repeat  
ENSBTAP00000010106   0.00000000000183   127-183   TSP-1 type 1 repeat  
  0.00000000000288   1219-1276   TSP-1 type 1 repeat  
  0.000000000017   566-630   TSP-1 type 1 repeat  
  0.00000000249   967-1026   TSP-1 type 1 repeat  
  0.0000000101   707-760   TSP-1 type 1 repeat  
  0.0000000111   297-350   TSP-1 type 1 repeat  
  0.000000222   633-702   TSP-1 type 1 repeat  
  0.000000222   1346-1410   TSP-1 type 1 repeat  
  0.00000034   1097-1152   TSP-1 type 1 repeat  
  0.00000183   1274-1325   TSP-1 type 1 repeat  
  0.0000968   1025-1096   TSP-1 type 1 repeat  
  0.00017   838-893   TSP-1 type 1 repeat  
  0.000183   358-431   TSP-1 type 1 repeat  
  0.000458   1154-1211   TSP-1 type 1 repeat  
  0.00157   444-509   TSP-1 type 1 repeat  
  0.0209   902-966   TSP-1 type 1 repeat  
ENSBTAP00000010680   0.00000000785   114-169   TSP-1 type 1 repeat  
ENSBTAP00000012059   0.00000000000445   610-665   TSP-1 type 1 repeat  
  0.0000000000129   667-715   TSP-1 type 1 repeat  
  0.0000000000157   554-610   TSP-1 type 1 repeat  
  0.000000000929   501-551   TSP-1 type 1 repeat  
  0.0000000144   754-807   TSP-1 type 1 repeat  
  0.000000732   443-489   TSP-1 type 1 repeat  
ENSBTAP00000012977   0.0000119   229-273   TSP-1 type 1 repeat  
ENSBTAP00000013745   0.00000000000000115   536-592   TSP-1 type 1 repeat  
  0.00000000012   845-897   TSP-1 type 1 repeat  
ENSBTAP00000015505   0.00000000000196   301-358   TSP-1 type 1 repeat  
  0.000000000102   22-70   TSP-1 type 1 repeat  
  0.000000000183   363-422   TSP-1 type 1 repeat  
  0.00000000102   421-478   TSP-1 type 1 repeat  
ENSBTAP00000016677   0.00000000000000641   543-598   TSP-1 type 1 repeat  
  0.000000000589   1482-1544   TSP-1 type 1 repeat  
  0.00000000432   946-998   TSP-1 type 1 repeat  
  0.0000000301   1374-1438   TSP-1 type 1 repeat  
  0.000000105   1328-1379   TSP-1 type 1 repeat  
  0.000000114   828-884   TSP-1 type 1 repeat  
  0.000000366   879-942   TSP-1 type 1 repeat  
  0.00000405   1433-1485   TSP-1 type 1 repeat  
ENSBTAP00000017583   0.0000000000000119   518-574   TSP-1 type 1 repeat  
ENSBTAP00000018083   0.00000209   129-181   TSP-1 type 1 repeat  
ENSBTAP00000018845   0.00000000209   564-612   TSP-1 type 1 repeat  
  0.0000000222   24-78   TSP-1 type 1 repeat  
  0.00000124   80-128   TSP-1 type 1 repeat  
ENSBTAP00000018887   0.000000000000235   546-601   TSP-1 type 1 repeat  
  0.00000000301   888-944   TSP-1 type 1 repeat  
  0.0000000129   825-884   TSP-1 type 1 repeat  
  0.000000034   944-1002   TSP-1 type 1 repeat  
  0.000000131   1001-1054   TSP-1 type 1 repeat  
ENSBTAP00000018961   0.0000000000000183   245-296   TSP-1 type 1 repeat  
  0.000000000157   298-353   TSP-1 type 1 repeat  
ENSBTAP00000019526   0.00000000000000262   554-609   TSP-1 type 1 repeat  
  0.0000000262   969-1022   TSP-1 type 1 repeat  
  0.0000000405   902-969   TSP-1 type 1 repeat  
  0.000000615   850-907   TSP-1 type 1 repeat  
ENSBTAP00000019927   0.0000000000275   143-196   TSP-1 type 1 repeat  
ENSBTAP00000020085   0.0000000000000183   385-441   TSP-1 type 1 repeat  
  0.00000000262   1072-1136   TSP-1 type 1 repeat  
  0.000000105   741-807   TSP-1 type 1 repeat  
  0.000000196   1022-1078   TSP-1 type 1 repeat  
ENSBTAP00000021009   0.0000000000222   137-185   TSP-1 type 1 repeat  
  0.000000000034   257-308   TSP-1 type 1 repeat  
  0.000000000051   189-249   TSP-1 type 1 repeat  
  0.0000000131   77-132   TSP-1 type 1 repeat  
  0.0000000458   312-372   TSP-1 type 1 repeat  
  0.0000102   380-415   TSP-1 type 1 repeat  
ENSBTAP00000021492   0.00000000000196   1087-1143   TSP-1 type 1 repeat  
  0.00000000955   915-976   TSP-1 type 1 repeat  
  0.0000000106   980-1036   TSP-1 type 1 repeat  
  0.0000000641   1038-1082   TSP-1 type 1 repeat  
  0.00000017   636-685   TSP-1 type 1 repeat  
ENSBTAP00000022420   0.0000000000000471   514-570   TSP-1 type 1 repeat  
  0.000000000615   879-939   TSP-1 type 1 repeat  
  0.00000000288   831-880   TSP-1 type 1 repeat  
ENSBTAP00000022843   0.000000759   176-216   TSP-1 type 1 repeat  
ENSBTAP00000022924   0.0000000589   74-121   TSP-1 type 1 repeat  
ENSBTAP00000024569   0.0000000000000017   432-489   TSP-1 type 1 repeat  
  0.000000000118   978-1029   TSP-1 type 1 repeat  
  0.000000000785   770-835   TSP-1 type 1 repeat  
  0.00000000327   838-896   TSP-1 type 1 repeat  
  0.000000419   902-963   TSP-1 type 1 repeat  
ENSBTAP00000024989   0.00000000000000209   795-852   TSP-1 type 1 repeat  
  0.00000000000000929   609-659   TSP-1 type 1 repeat  
  0.000000000000222   852-909   TSP-1 type 1 repeat  
  0.0000000000432   663-715   TSP-1 type 1 repeat  
  0.00000916   912-955   TSP-1 type 1 repeat  
  0.000101   554-606   TSP-1 type 1 repeat  
ENSBTAP00000026411   0.0000000000000314   528-578   TSP-1 type 1 repeat  
  0.000000000144   958-1014   TSP-1 type 1 repeat  
  0.0000000157   846-907   TSP-1 type 1 repeat  
  0.000000017   910-953   TSP-1 type 1 repeat  
  0.0000000693   788-847   TSP-1 type 1 repeat  
ENSBTAP00000027155   0.000000000445   342-392   TSP-1 type 1 repeat  
ENSBTAP00000028224   0.0000000000000118   553-603   TSP-1 type 1 repeat  
  0.000000000523   972-1022   TSP-1 type 1 repeat  
  0.00000000837   912-969   TSP-1 type 1 repeat  
  0.0000017   849-907   TSP-1 type 1 repeat  
ENSBTAP00000033320   0.0000000000262   544-590   TSP-1 type 1 repeat  
  0.00000902   63-111   TSP-1 type 1 repeat  
ENSBTAP00000036833   0.0000000000000353   558-614   TSP-1 type 1 repeat  
  0.00000000000301   1207-1266   TSP-1 type 1 repeat  
  0.00000000000641   1079-1137   TSP-1 type 1 repeat  
  0.00000000122   1156-1208   TSP-1 type 1 repeat  
  0.00000000183   1021-1080   TSP-1 type 1 repeat  
  0.00000000288   1422-1477   TSP-1 type 1 repeat  
  0.00000000405   1359-1418   TSP-1 type 1 repeat  
  0.00000000536   963-1025   TSP-1 type 1 repeat  
  0.0000000122   1309-1362   TSP-1 type 1 repeat  
  0.0000000301   1658-1713   TSP-1 type 1 repeat  
  0.000000405   1472-1533   TSP-1 type 1 repeat  
  0.0000017   1528-1591   TSP-1 type 1 repeat  
  0.00000798   852-905   TSP-1 type 1 repeat  
  0.0249   1593-1640   TSP-1 type 1 repeat  
  0.0497   914-965   TSP-1 type 1 repeat  
ENSBTAP00000037826   0.0000549   194-238   TSP-1 type 1 repeat  
ENSBTAP00000037830   0.0000000000000628   334-389   TSP-1 type 1 repeat  
  0.00000000000128   283-329   TSP-1 type 1 repeat  
  0.000000000183   448-495   TSP-1 type 1 repeat  
  0.000000000445   389-444   TSP-1 type 1 repeat  
ENSBTAP00000038623   0.0000000000000902   525-581   TSP-1 type 1 repeat  
  0.000000000693   933-983   TSP-1 type 1 repeat  
  0.00000000288   1555-1614   TSP-1 type 1 repeat  
  0.00000000994   1444-1507   TSP-1 type 1 repeat  
  0.0000000235   811-868   TSP-1 type 1 repeat  
  0.000000249   1397-1449   TSP-1 type 1 repeat  
  0.000000392   1504-1556   TSP-1 type 1 repeat  
ENSBTAP00000039541   0.0000000000000392   218-269   TSP-1 type 1 repeat  
  0.00000000209   272-326   TSP-1 type 1 repeat  
ENSBTAP00000039635   0.000000000000017   251-301   TSP-1 type 1 repeat  
  0.00000000157   305-359   TSP-1 type 1 repeat  
ENSBTAP00000041373   0.00000000000000863   229-279   TSP-1 type 1 repeat  
  0.000000000889   283-337   TSP-1 type 1 repeat  
ENSBTAP00000041504   0.00000000000000119   2530-2587   TSP-1 type 1 repeat  
  0.000000000000353   2955-3013   TSP-1 type 1 repeat  
  0.000000000000602   4241-4289   TSP-1 type 1 repeat  
  0.000000000000876   3988-4045   TSP-1 type 1 repeat  
  0.00000000000222   2688-2738   TSP-1 type 1 repeat  
  0.0000000000051   3228-3276   TSP-1 type 1 repeat  
  0.0000000000106   3798-3847   TSP-1 type 1 repeat  
  0.000000000392   2801-2856   TSP-1 type 1 repeat  
  0.000000000824   3931-3988   TSP-1 type 1 repeat  
  0.000000000902   3379-3438   TSP-1 type 1 repeat  
  0.00000000222   3622-3665   TSP-1 type 1 repeat  
  0.00000000249   2477-2530   TSP-1 type 1 repeat  
  0.00000000458   1690-1738   TSP-1 type 1 repeat  
  0.0000000144   3159-3196   TSP-1 type 1 repeat  
  0.0000000157   3446-3494   TSP-1 type 1 repeat  
  0.0000000602   4602-4655   TSP-1 type 1 repeat  
  0.0000000889   4756-4805   TSP-1 type 1 repeat  
  0.0000000968   3017-3057   TSP-1 type 1 repeat  
  0.000000719   1746-1798   TSP-1 type 1 repeat  
  0.00000144   2747-2796   TSP-1 type 1 repeat  
  0.0000017   1902-1960   TSP-1 type 1 repeat  
  0.00000549   3866-3918   TSP-1 type 1 repeat  
  0.00000863   4302-4352   TSP-1 type 1 repeat  
  0.0000123   4146-4193   TSP-1 type 1 repeat  
ENSBTAP00000042078   7.06e-16   491-542   TSP-1 type 1 repeat  
  0.0000000000000157   434-489   TSP-1 type 1 repeat  
  0.000000000575   381-423   TSP-1 type 1 repeat  
ENSBTAP00000047583   0.00000000144   499-545   TSP-1 type 1 repeat  
  0.0000000785   26-73   TSP-1 type 1 repeat  
ENSBTAP00000053425   0.00000000000994   403-460   TSP-1 type 1 repeat  
  0.000000000122   227-284   TSP-1 type 1 repeat  
  0.000000000128   285-341   TSP-1 type 1 repeat  
  0.000000000209   463-515   TSP-1 type 1 repeat  
  0.000000641   173-224   TSP-1 type 1 repeat  
  0.00000115   345-398   TSP-1 type 1 repeat  
ENSBTAP00000053678   9.68e-16   4535-4593   TSP-1 type 1 repeat  
  0.00000000000000144   4592-4650   TSP-1 type 1 repeat  
  0.00000000000000876   4480-4536   TSP-1 type 1 repeat  
  0.0000000000000379   4650-4707   TSP-1 type 1 repeat  
  0.00000000000051   4764-4821   TSP-1 type 1 repeat  
  0.000000000000575   4707-4764   TSP-1 type 1 repeat  
ENSBTAP00000053777   0.00000000000000706   550-605   TSP-1 type 1 repeat  
  0.000000000445   969-1015   TSP-1 type 1 repeat  
  0.00000000157   908-966   TSP-1 type 1 repeat  
  0.0000000123   846-904   TSP-1 type 1 repeat  
ENSBTAP00000053804   0.000000000068   661-728   TSP-1 type 1 repeat  
  0.000000000706   1539-1607   TSP-1 type 1 repeat  
  0.00000000144   783-849   TSP-1 type 1 repeat  
  0.00000000249   432-492   TSP-1 type 1 repeat  
  0.00000000693   32-81   TSP-1 type 1 repeat  
  0.0000000157   376-437   TSP-1 type 1 repeat  
  0.000000017   529-583   TSP-1 type 1 repeat  
  0.0000000235   728-788   TSP-1 type 1 repeat  
  0.000000103   1669-1725   TSP-1 type 1 repeat  
  0.000000249   296-359   TSP-1 type 1 repeat  
  0.00000112   610-666   TSP-1 type 1 repeat  
  0.0000889   1607-1666   TSP-1 type 1 repeat  
ENSBTAP00000053824   0.00000000051   1199-1256   TSP-1 type 1 repeat  
  0.000000000589   551-614   TSP-1 type 1 repeat  
  0.000000000589   133-180   TSP-1 type 1 repeat  
  0.00000000183   952-1009   TSP-1 type 1 repeat  
  0.0000000288   290-343   TSP-1 type 1 repeat  
  0.000000244   1321-1385   TSP-1 type 1 repeat  
  0.000000772   691-743   TSP-1 type 1 repeat  
  0.000000837   1008-1078   TSP-1 type 1 repeat  
  0.00000085   1082-1130   TSP-1 type 1 repeat  
  0.00000144   618-686   TSP-1 type 1 repeat  
  0.000017   1254-1309   TSP-1 type 1 repeat  
  0.0000222   1134-1184   TSP-1 type 1 repeat  
  0.0000262   749-820   TSP-1 type 1 repeat  
  0.0000706   876-951   TSP-1 type 1 repeat  
ENSBTAP00000053837   0.000000000000314   556-612   TSP-1 type 1 repeat  
  0.00000000017   842-899   TSP-1 type 1 repeat  
  0.00000000068   903-959   TSP-1 type 1 repeat  
  0.0000000641   1015-1069   TSP-1 type 1 repeat  
  0.00000432   962-1017   TSP-1 type 1 repeat  
ENSBTAP00000053968   0.0000000000000106   316-372   TSP-1 type 1 repeat  
  0.0000000000000706   372-427   TSP-1 type 1 repeat  
  0.000000000000196   427-482   TSP-1 type 1 repeat  
  0.0000000000111   265-313   TSP-1 type 1 repeat  
ENSBTAP00000054316   0.0000000000471   45-96   TSP-1 type 1 repeat  
ENSBTAP00000054928   0.00000000405   548-606   TSP-1 type 1 repeat  
  0.00000144   665-720   TSP-1 type 1 repeat  
ENSBTAP00000055019   0.00000000000183   127-183   TSP-1 type 1 repeat  
  0.00000000000288   1208-1265   TSP-1 type 1 repeat  
  0.000000000017   555-619   TSP-1 type 1 repeat  
  0.00000000235   956-1015   TSP-1 type 1 repeat  
  0.0000000101   696-749   TSP-1 type 1 repeat  
  0.000000011   285-338   TSP-1 type 1 repeat  
  0.000000222   622-691   TSP-1 type 1 repeat  
  0.000000222   1335-1399   TSP-1 type 1 repeat  
  0.000000327   1086-1141   TSP-1 type 1 repeat  
  0.00000183   1263-1314   TSP-1 type 1 repeat  
  0.0000811   1014-1085   TSP-1 type 1 repeat  
ENSBTAP00000055085   0.00000000419   540-598   TSP-1 type 1 repeat  
  0.00000144   657-712   TSP-1 type 1 repeat  
ENSBTAP00000055332   0.00000000051   1201-1258   TSP-1 type 1 repeat  
  0.000000000589   551-614   TSP-1 type 1 repeat  
  0.000000000589   133-180   TSP-1 type 1 repeat  
  0.00000000131   952-999   TSP-1 type 1 repeat  
  0.0000000288   290-343   TSP-1 type 1 repeat  
  0.000000244   1323-1387   TSP-1 type 1 repeat  
  0.000000772   691-743   TSP-1 type 1 repeat  
  0.000000824   618-686   TSP-1 type 1 repeat  
  0.00000085   1084-1132   TSP-1 type 1 repeat  
  0.00000353   1010-1080   TSP-1 type 1 repeat  
  0.000017   1256-1311   TSP-1 type 1 repeat  
  0.0000222   1136-1186   TSP-1 type 1 repeat  
  0.0000262   749-820   TSP-1 type 1 repeat  
  0.0000523   876-951   TSP-1 type 1 repeat  
  0.0000837   821-878   TSP-1 type 1 repeat  
ENSBTAP00000055940   0.00000000157   256-291   TSP-1 type 1 repeat  
ENSBTAP00000056020   0.0000000000000405   90-145   TSP-1 type 1 repeat  
  0.000000000000235   145-200   TSP-1 type 1 repeat  
  0.00000000000667   42-85   TSP-1 type 1 repeat  
  0.00000000157   200-255   TSP-1 type 1 repeat  
ENSBTAP00000056356   0.0000000000000144   27-77   TSP-1 type 1 repeat  
  0.0000000000654   485-541   TSP-1 type 1 repeat  
  0.00000000327   372-434   TSP-1 type 1 repeat  
  0.0000000085   437-480   TSP-1 type 1 repeat  
  0.0000000327   315-374   TSP-1 type 1 repeat  
 
Weak hits:
ENSBTAP00000002585   0.00119   141-178   TSP-1 type 1 repeat  
ENSBTAP00000017992   0.0484   172-202   TSP-1 type 1 repeat  
ENSBTAP00000029170   0.00418   112-164   TSP-1 type 1 repeat  
ENSBTAP00000043576   0.0445   205-253   TSP-1 type 1 repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]