SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Monodelphis domestica 69_5 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Monodelphis domestica 69_5

Assignment details

(show help)


Monodelphis domestica 69_5 has 252 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000000341   0.0000068   229-273   TSP-1 type 1 repeat  
ENSMODP00000000700   0.0000000000000484   398-454   TSP-1 type 1 repeat  
  0.000000000000484   454-509   TSP-1 type 1 repeat  
  0.00000000000144   509-564   TSP-1 type 1 repeat  
  0.0000000000379   346-395   TSP-1 type 1 repeat  
  0.0000000000916   257-308   TSP-1 type 1 repeat  
ENSMODP00000000814   2.88e-16   491-548   TSP-1 type 1 repeat  
  0.00000000000000209   437-487   TSP-1 type 1 repeat  
  0.000000000122   381-430   TSP-1 type 1 repeat  
ENSMODP00000001326   0.0000034   217-262   TSP-1 type 1 repeat  
ENSMODP00000001348   0.0000000000249   107-154   TSP-1 type 1 repeat  
  0.0000000000275   1178-1228   TSP-1 type 1 repeat  
  0.00000000105   529-584   TSP-1 type 1 repeat  
  0.00000000183   929-972   TSP-1 type 1 repeat  
  0.0000000353   264-318   TSP-1 type 1 repeat  
  0.000000196   1298-1362   TSP-1 type 1 repeat  
  0.00000068   665-718   TSP-1 type 1 repeat  
  0.000000994   1059-1107   TSP-1 type 1 repeat  
  0.00000144   983-1053   TSP-1 type 1 repeat  
  0.0000144   1110-1163   TSP-1 type 1 repeat  
  0.0000379   591-660   TSP-1 type 1 repeat  
  0.000209   797-851   TSP-1 type 1 repeat  
  0.000327   850-924   TSP-1 type 1 repeat  
  0.000366   1231-1283   TSP-1 type 1 repeat  
  0.00275   724-794   TSP-1 type 1 repeat  
  0.00471   408-470   TSP-1 type 1 repeat  
  0.0209   26-101   TSP-1 type 1 repeat  
  0.0249   328-407   TSP-1 type 1 repeat  
ENSMODP00000001854   0.00000000000000222   587-644   TSP-1 type 1 repeat  
  0.000000000112   925-990   TSP-1 type 1 repeat  
  0.000000000235   1133-1181   TSP-1 type 1 repeat  
  0.000000000249   993-1051   TSP-1 type 1 repeat  
  0.000000641   1057-1101   TSP-1 type 1 repeat  
  0.00811   883-931   TSP-1 type 1 repeat  
ENSMODP00000002598   1.7e-17   840-898   TSP-1 type 1 repeat  
  0.00000000000000119   786-837   TSP-1 type 1 repeat  
  0.00000000000000471   598-648   TSP-1 type 1 repeat  
  0.00000000068   653-704   TSP-1 type 1 repeat  
  0.0000000732   899-944   TSP-1 type 1 repeat  
  0.000000458   542-595   TSP-1 type 1 repeat  
ENSMODP00000003423   0.0000000000000157   4201-4251   TSP-1 type 1 repeat  
  0.0000000000000301   2541-2598   TSP-1 type 1 repeat  
  0.000000000000249   3756-3814   TSP-1 type 1 repeat  
  0.000000000000249   3950-4007   TSP-1 type 1 repeat  
  0.000000000000262   3189-3245   TSP-1 type 1 repeat  
  0.000000000000314   2967-3024   TSP-1 type 1 repeat  
  0.0000000000876   2811-2867   TSP-1 type 1 repeat  
  0.000000000275   3893-3950   TSP-1 type 1 repeat  
  0.000000000288   3581-3631   TSP-1 type 1 repeat  
  0.00000000262   3410-3458   TSP-1 type 1 repeat  
  0.0000000157   2488-2538   TSP-1 type 1 repeat  
  0.0000000405   4565-4619   TSP-1 type 1 repeat  
  0.0000000667   4723-4769   TSP-1 type 1 repeat  
  0.000000105   3343-3402   TSP-1 type 1 repeat  
  0.000000314   1753-1792   TSP-1 type 1 repeat  
  0.000000523   1699-1750   TSP-1 type 1 repeat  
  0.00000471   1909-1967   TSP-1 type 1 repeat  
  0.0000051   3029-3068   TSP-1 type 1 repeat  
  0.00000863   3828-3880   TSP-1 type 1 repeat  
  0.0000228   4109-4155   TSP-1 type 1 repeat  
  0.000157   4262-4314   TSP-1 type 1 repeat  
  0.000589   2761-2808   TSP-1 type 1 repeat  
  0.0209   4317-4366   TSP-1 type 1 repeat  
  0.0275   2703-2752   TSP-1 type 1 repeat  
ENSMODP00000003824   0.000000000000366   360-415   TSP-1 type 1 repeat  
  0.000000000051   1150-1210   TSP-1 type 1 repeat  
  0.00000000017   953-1011   TSP-1 type 1 repeat  
  0.000000000419   876-938   TSP-1 type 1 repeat  
  0.000000000798   1006-1067   TSP-1 type 1 repeat  
  0.00000000196   1324-1382   TSP-1 type 1 repeat  
  0.00000000301   765-826   TSP-1 type 1 repeat  
  0.00000000314   1450-1500   TSP-1 type 1 repeat  
  0.00000000497   1385-1445   TSP-1 type 1 repeat  
  0.000000011   826-881   TSP-1 type 1 repeat  
  0.0000000144   1216-1269   TSP-1 type 1 repeat  
  0.0000000209   1267-1324   TSP-1 type 1 repeat  
  0.0000000288   1099-1151   TSP-1 type 1 repeat  
  0.000183   648-704   TSP-1 type 1 repeat  
  0.000419   702-766   TSP-1 type 1 repeat  
ENSMODP00000004183   0.0000000017   561-606   TSP-1 type 1 repeat  
  0.000000183   66-113   TSP-1 type 1 repeat  
ENSMODP00000004312   0.000000000000144   554-609   TSP-1 type 1 repeat  
  0.00000000034   896-952   TSP-1 type 1 repeat  
  0.0000000693   833-892   TSP-1 type 1 repeat  
  0.000000262   1010-1052   TSP-1 type 1 repeat  
  0.000000432   956-1010   TSP-1 type 1 repeat  
ENSMODP00000004913   0.0000157   210-253   TSP-1 type 1 repeat  
ENSMODP00000005415   0.00000000562   276-324   TSP-1 type 1 repeat  
ENSMODP00000006177   0.0000000602   175-215   TSP-1 type 1 repeat  
ENSMODP00000006198   0.000000000968   32-78   TSP-1 type 1 repeat  
ENSMODP00000006219   0.000000000000017   141-191   TSP-1 type 1 repeat  
  0.000000000458   195-249   TSP-1 type 1 repeat  
ENSMODP00000006289   0.00000000000000196   543-599   TSP-1 type 1 repeat  
  0.000000000122   852-905   TSP-1 type 1 repeat  
ENSMODP00000006354   0.0000000000000249   514-570   TSP-1 type 1 repeat  
  0.00000000131   893-950   TSP-1 type 1 repeat  
  0.00000000157   839-891   TSP-1 type 1 repeat  
ENSMODP00000006395   0.00000000000000641   515-571   TSP-1 type 1 repeat  
ENSMODP00000006466   0.00000353   144-197   TSP-1 type 1 repeat  
ENSMODP00000007157   1.18e-16   496-547   TSP-1 type 1 repeat  
  0.0000000000000129   439-494   TSP-1 type 1 repeat  
  0.000000000353   385-428   TSP-1 type 1 repeat  
ENSMODP00000007590   0.00000000000366   605-660   TSP-1 type 1 repeat  
  0.00000000000484   549-605   TSP-1 type 1 repeat  
  0.0000000000102   660-715   TSP-1 type 1 repeat  
  0.0000000017   496-546   TSP-1 type 1 repeat  
  0.000000017   749-802   TSP-1 type 1 repeat  
  0.000000719   438-484   TSP-1 type 1 repeat  
ENSMODP00000008383   0.00000000000157   345-400   TSP-1 type 1 repeat  
  0.0000000000876   65-119   TSP-1 type 1 repeat  
  0.00000000068   542-604   TSP-1 type 1 repeat  
  0.0000000012   427-486   TSP-1 type 1 repeat  
  0.00000000183   485-542   TSP-1 type 1 repeat  
ENSMODP00000008860   0.00000000419   81-128   TSP-1 type 1 repeat  
ENSMODP00000008961   0.00000000379   211-260   TSP-1 type 1 repeat  
  0.00000017   147-208   TSP-1 type 1 repeat  
ENSMODP00000010041   0.00000000000000314   421-478   TSP-1 type 1 repeat  
  0.0000000000902   958-1013   TSP-1 type 1 repeat  
  0.00000000575   768-826   TSP-1 type 1 repeat  
  0.00000000837   828-884   TSP-1 type 1 repeat  
  0.0000000353   889-951   TSP-1 type 1 repeat  
  0.000183   712-766   TSP-1 type 1 repeat  
ENSMODP00000010893   0.0000000000000101   252-303   TSP-1 type 1 repeat  
  0.00000000222   306-359   TSP-1 type 1 repeat  
ENSMODP00000011131   0.0000000000536   492-548   TSP-1 type 1 repeat  
  0.000000000122   315-372   TSP-1 type 1 repeat  
  0.000000000235   552-603   TSP-1 type 1 repeat  
  0.000000000301   373-429   TSP-1 type 1 repeat  
  0.000000445   433-486   TSP-1 type 1 repeat  
  0.0000275   262-312   TSP-1 type 1 repeat  
ENSMODP00000011677   0.00000000000000144   536-591   TSP-1 type 1 repeat  
  0.00000000445   890-949   TSP-1 type 1 repeat  
  0.00000000837   949-997   TSP-1 type 1 repeat  
  0.0000000732   829-887   TSP-1 type 1 repeat  
ENSMODP00000012903   0.00000000131   156-207   TSP-1 type 1 repeat  
ENSMODP00000013042   0.00000000314   342-388   TSP-1 type 1 repeat  
ENSMODP00000013517   0.00000000000249   252-302   TSP-1 type 1 repeat  
  0.00000000000262   133-181   TSP-1 type 1 repeat  
  0.0000000000719   185-245   TSP-1 type 1 repeat  
  0.0000000366   74-128   TSP-1 type 1 repeat  
  0.000000183   375-412   TSP-1 type 1 repeat  
  0.00000235   307-368   TSP-1 type 1 repeat  
ENSMODP00000013743   0.00000000196   286-333   TSP-1 type 1 repeat  
ENSMODP00000014439   0.000000000000126   511-567   TSP-1 type 1 repeat  
  0.00000000628   1527-1586   TSP-1 type 1 repeat  
  0.0000000222   797-854   TSP-1 type 1 repeat  
  0.0000000288   1416-1479   TSP-1 type 1 repeat  
  0.0000000379   915-969   TSP-1 type 1 repeat  
  0.000000119   1475-1528   TSP-1 type 1 repeat  
  0.000000759   1372-1421   TSP-1 type 1 repeat  
  0.00000249   851-917   TSP-1 type 1 repeat  
ENSMODP00000014447   0.00000000000000288   4713-4771   TSP-1 type 1 repeat  
  0.00000000000000301   4599-4657   TSP-1 type 1 repeat  
  0.00000000000000405   4656-4714   TSP-1 type 1 repeat  
  0.0000000000000275   4544-4600   TSP-1 type 1 repeat  
  0.000000000000157   4828-4885   TSP-1 type 1 repeat  
  0.000000000000288   4770-4828   TSP-1 type 1 repeat  
ENSMODP00000015193   0.00000000000000157   529-580   TSP-1 type 1 repeat  
  0.000000000353   948-998   TSP-1 type 1 repeat  
  0.0000000157   879-945   TSP-1 type 1 repeat  
  0.0000000772   826-883   TSP-1 type 1 repeat  
ENSMODP00000015905   0.0000000000000889   551-601   TSP-1 type 1 repeat  
  0.000000000101   1032-1089   TSP-1 type 1 repeat  
  0.0000000107   926-982   TSP-1 type 1 repeat  
  0.0000000379   985-1028   TSP-1 type 1 repeat  
  0.0000000549   863-922   TSP-1 type 1 repeat  
ENSMODP00000016233   0.0000000000000916   248-304   TSP-1 type 1 repeat  
  0.000000000222   603-668   TSP-1 type 1 repeat  
  0.00000000275   990-1054   TSP-1 type 1 repeat  
  0.000000144   875-935   TSP-1 type 1 repeat  
  0.000000746   939-995   TSP-1 type 1 repeat  
  0.00000811   672-728   TSP-1 type 1 repeat  
  0.000693   758-815   TSP-1 type 1 repeat  
  0.000732   550-608   TSP-1 type 1 repeat  
  0.00183   812-875   TSP-1 type 1 repeat  
ENSMODP00000016252   0.000000000068   912-970   TSP-1 type 1 repeat  
  0.00000000288   106-163   TSP-1 type 1 repeat  
  0.00000000719   803-857   TSP-1 type 1 repeat  
  0.0000000262   682-748   TSP-1 type 1 repeat  
  0.00000017   857-917   TSP-1 type 1 repeat  
  0.00000471   625-685   TSP-1 type 1 repeat  
  0.000144   750-800   TSP-1 type 1 repeat  
ENSMODP00000017716   0.0000000000000994   182-238   TSP-1 type 1 repeat  
  0.00000000000262   1274-1331   TSP-1 type 1 repeat  
  0.0000000000109   622-686   TSP-1 type 1 repeat  
  0.00000000183   1023-1082   TSP-1 type 1 repeat  
  0.0000000196   352-406   TSP-1 type 1 repeat  
  0.000000144   689-758   TSP-1 type 1 repeat  
  0.000000196   763-817   TSP-1 type 1 repeat  
  0.000000327   1401-1465   TSP-1 type 1 repeat  
  0.000000785   1157-1205   TSP-1 type 1 repeat  
  0.00000327   1329-1379   TSP-1 type 1 repeat  
  0.00000484   1081-1151   TSP-1 type 1 repeat  
  0.00017   413-488   TSP-1 type 1 repeat  
  0.000196   1208-1270   TSP-1 type 1 repeat  
  0.000222   894-948   TSP-1 type 1 repeat  
  0.000458   500-565   TSP-1 type 1 repeat  
  0.00916   109-181   TSP-1 type 1 repeat  
  0.0157   948-1022   TSP-1 type 1 repeat  
ENSMODP00000018354   0.0000000000314   661-728   TSP-1 type 1 repeat  
  0.000000000458   1542-1609   TSP-1 type 1 repeat  
  0.00000000127   432-492   TSP-1 type 1 repeat  
  0.00000000314   788-849   TSP-1 type 1 repeat  
  0.00000000785   377-437   TSP-1 type 1 repeat  
  0.0000000131   529-583   TSP-1 type 1 repeat  
  0.0000000157   33-81   TSP-1 type 1 repeat  
  0.0000000497   728-788   TSP-1 type 1 repeat  
  0.000000301   296-359   TSP-1 type 1 repeat  
  0.000000301   610-666   TSP-1 type 1 repeat  
  0.000000445   1670-1727   TSP-1 type 1 repeat  
  0.000235   1488-1547   TSP-1 type 1 repeat  
  0.000288   1609-1668   TSP-1 type 1 repeat  
ENSMODP00000020253   0.0000667   188-233   TSP-1 type 1 repeat  
ENSMODP00000021904   0.0000011   200-244   TSP-1 type 1 repeat  
ENSMODP00000022041   0.00000000628   146-201   TSP-1 type 1 repeat  
ENSMODP00000022306   0.000017   193-237   TSP-1 type 1 repeat  
ENSMODP00000023210   0.0000000000000262   104-159   TSP-1 type 1 repeat  
  0.000000000000209   159-214   TSP-1 type 1 repeat  
  0.00000000000902   56-99   TSP-1 type 1 repeat  
  0.00000000262   214-269   TSP-1 type 1 repeat  
ENSMODP00000023447   0.00000000183   1005-1066   TSP-1 type 1 repeat  
  0.00000000209   44-83   TSP-1 type 1 repeat  
  0.0000000034   823-881   TSP-1 type 1 repeat  
  0.00000000615   953-1011   TSP-1 type 1 repeat  
  0.0000000523   765-823   TSP-1 type 1 repeat  
  0.00000301   885-949   TSP-1 type 1 repeat  
  0.00017   707-763   TSP-1 type 1 repeat  
ENSMODP00000023895   0.00000000000000379   550-605   TSP-1 type 1 repeat  
  0.00000000249   965-1016   TSP-1 type 1 repeat  
  0.00000000366   908-966   TSP-1 type 1 repeat  
  0.000000114   846-904   TSP-1 type 1 repeat  
ENSMODP00000024041   0.0000000000000327   259-310   TSP-1 type 1 repeat  
  0.00000000366   313-367   TSP-1 type 1 repeat  
ENSMODP00000024184   0.000000000115   617-670   TSP-1 type 1 repeat  
  0.000000000549   328-388   TSP-1 type 1 repeat  
  0.000000000785   383-443   TSP-1 type 1 repeat  
  0.000000000968   481-535   TSP-1 type 1 repeat  
  0.000000051   673-730   TSP-1 type 1 repeat  
  0.0000000575   726-791   TSP-1 type 1 repeat  
  0.000000144   1388-1455   TSP-1 type 1 repeat  
  0.0000034   559-614   TSP-1 type 1 repeat  
  0.00000432   250-310   TSP-1 type 1 repeat  
  0.00000641   1516-1572   TSP-1 type 1 repeat  
  0.00000902   1338-1394   TSP-1 type 1 repeat  
ENSMODP00000024502   0.000000000000589   558-614   TSP-1 type 1 repeat  
  0.00000000017   905-961   TSP-1 type 1 repeat  
  0.000000000419   844-901   TSP-1 type 1 repeat  
  0.0000000196   1019-1070   TSP-1 type 1 repeat  
  0.00000114   964-1019   TSP-1 type 1 repeat  
ENSMODP00000025382   0.000000000183   564-611   TSP-1 type 1 repeat  
  0.0000000288   24-78   TSP-1 type 1 repeat  
  0.000000458   80-128   TSP-1 type 1 repeat  
ENSMODP00000025394   0.000000000249   491-537   TSP-1 type 1 repeat  
  0.0000000445   30-78   TSP-1 type 1 repeat  
ENSMODP00000025406   0.0000144   45-92   TSP-1 type 1 repeat  
ENSMODP00000025523   0.000000000772   1514-1572   TSP-1 type 1 repeat  
  0.0000000144   963-1015   TSP-1 type 1 repeat  
  0.0000000353   1404-1467   TSP-1 type 1 repeat  
  0.000000109   896-959   TSP-1 type 1 repeat  
  0.000000196   843-901   TSP-1 type 1 repeat  
  0.000000353   1359-1409   TSP-1 type 1 repeat  
  0.000000419   1466-1515   TSP-1 type 1 repeat  
  0.0122   584-614   TSP-1 type 1 repeat  
ENSMODP00000026265   0.000000000000183   581-635   TSP-1 type 1 repeat  
  0.000000275   891-944   TSP-1 type 1 repeat  
ENSMODP00000026267   6.15e-16   536-592   TSP-1 type 1 repeat  
  0.000000000968   834-888   TSP-1 type 1 repeat  
  0.00000249   886-914   TSP-1 type 1 repeat  
ENSMODP00000036332   0.000000000706   2-57   TSP-1 type 1 repeat  
  0.000000000798   817-875   TSP-1 type 1 repeat  
  0.0000000183   585-653   TSP-1 type 1 repeat  
  0.000000209   655-705   TSP-1 type 1 repeat  
  0.000000392   708-762   TSP-1 type 1 repeat  
  0.0000157   760-822   TSP-1 type 1 repeat  
  0.00222   531-590   TSP-1 type 1 repeat  
ENSMODP00000036878   0.00000000000000116   829-886   TSP-1 type 1 repeat  
  0.00000000000000981   610-660   TSP-1 type 1 repeat  
  0.000000000000144   885-943   TSP-1 type 1 repeat  
  0.0000000249   664-709   TSP-1 type 1 repeat  
  0.00000641   555-607   TSP-1 type 1 repeat  
  0.000144   943-988   TSP-1 type 1 repeat  
ENSMODP00000037028   0.0000235   58-104   TSP-1 type 1 repeat  
  0.00484   542-585   TSP-1 type 1 repeat  
ENSMODP00000039232   0.00000000051   52-96   TSP-1 type 1 repeat  
 
Weak hits:
ENSMODP00000024370   0.000222   138-191   TSP-1 type 1 repeat  
ENSMODP00000031588   0.00981   152-190   TSP-1 type 1 repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.