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CCCH zinc finger superfamily domain assignments
in
Rattus norvegicus 76_5.0

Assignment details

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Rattus norvegicus 76_5.0 has 59 significant domains in 37 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000001053   0.0000759   793-815   CCCH zinc finger  
ENSRNOP00000003689   0.0000000107   411-444   CCCH zinc finger  
ENSRNOP00000006725   0.000000000222   185-221   CCCH zinc finger  
  0.000000000458   148-183   CCCH zinc finger  
ENSRNOP00000007276   0.000000301   100-124   CCCH zinc finger  
ENSRNOP00000009733   0.00000726   290-320   CCCH zinc finger  
  0.0353   90-112   CCCH zinc finger  
  0.0589   121-157   CCCH zinc finger  
ENSRNOP00000010120   0.0000612   773-793   CCCH zinc finger  
  0.000235   664-692   CCCH zinc finger  
  0.0153   720-742   CCCH zinc finger  
  0.0173   746-771   CCCH zinc finger  
ENSRNOP00000010332   0.00000327   54-79   CCCH zinc finger  
ENSRNOP00000012354   0.00000000981   409-441   CCCH zinc finger  
ENSRNOP00000013124   0.00000051   57-80   CCCH zinc finger  
  0.000000863   88-109   CCCH zinc finger  
  0.0000412   208-233   CCCH zinc finger  
ENSRNOP00000013145   0.00000157   32-56   CCCH zinc finger  
  0.00000327   3-27   CCCH zinc finger  
  0.000209   167-191   CCCH zinc finger  
  0.000471   325-353   CCCH zinc finger  
ENSRNOP00000013551   0.000000301   94-117   CCCH zinc finger  
  0.0000615   260-283   CCCH zinc finger  
  0.00563   417-444   CCCH zinc finger  
ENSRNOP00000015467   0.00000863   40-64   CCCH zinc finger  
ENSRNOP00000019084   0.0000644   169-194   CCCH zinc finger  
ENSRNOP00000020509   2.09e-21   445-500   CCCH zinc finger  
  0.0000000824   417-443   CCCH zinc finger  
  0.0000000929   389-414   CCCH zinc finger  
ENSRNOP00000023642   0.000000549   282-315   CCCH zinc finger  
  0.0432   258-280   CCCH zinc finger  
  0.0628   86-103   CCCH zinc finger  
ENSRNOP00000023845   1.44e-16   261-302   CCCH zinc finger  
  0.00000000111   233-259   CCCH zinc finger  
  0.000000968   206-230   CCCH zinc finger  
ENSRNOP00000024322   1.31e-19   325-380   CCCH zinc finger  
  0.00000000419   297-323   CCCH zinc finger  
  0.000000222   270-294   CCCH zinc finger  
ENSRNOP00000026087   0.00000353   162-184   CCCH zinc finger  
ENSRNOP00000026205   0.0000216   892-926   CCCH zinc finger  
  0.0000824   490-519   CCCH zinc finger  
  0.000159   763-795   CCCH zinc finger  
  0.00255   619-650   CCCH zinc finger  
ENSRNOP00000026661   0.000000000576   100-134   CCCH zinc finger  
  0.0000000017   137-168   CCCH zinc finger  
ENSRNOP00000030648   0.000000144   63-87   CCCH zinc finger  
  0.0000144   142-172   CCCH zinc finger  
  0.000523   37-59   CCCH zinc finger  
  0.0249   90-118   CCCH zinc finger  
  0.0267   119-140   CCCH zinc finger  
ENSRNOP00000030935   0.00000759   303-327   CCCH zinc finger  
ENSRNOP00000031469   0.0000144   156-179   CCCH zinc finger  
ENSRNOP00000035933   0.000017   216-238   CCCH zinc finger  
ENSRNOP00000038016   0.000017   180-209   CCCH zinc finger  
ENSRNOP00000040388   0.00000235   46-72   CCCH zinc finger  
ENSRNOP00000040501   0.000000392   100-124   CCCH zinc finger  
ENSRNOP00000043125   0.000000000589   140-173   CCCH zinc finger  
  0.000000000615   176-208   CCCH zinc finger  
ENSRNOP00000046991   0.000000144   63-87   CCCH zinc finger  
  0.0000392   145-172   CCCH zinc finger  
  0.000903   38-59   CCCH zinc finger  
  0.00392   119-143   CCCH zinc finger  
  0.0262   91-119   CCCH zinc finger  
ENSRNOP00000047839   0.00000000235   191-226   CCCH zinc finger  
ENSRNOP00000050824   0.00000615   11-35   CCCH zinc finger  
  0.000379   94-116   CCCH zinc finger  
ENSRNOP00000051546   0.000000000144   111-146   CCCH zinc finger  
  0.000000000183   151-183   CCCH zinc finger  
ENSRNOP00000056945   0.000000392   64-88   CCCH zinc finger  
  0.0000615   146-173   CCCH zinc finger  
  0.00314   39-60   CCCH zinc finger  
ENSRNOP00000058822   2.22e-21   445-500   CCCH zinc finger  
  0.000000089   417-443   CCCH zinc finger  
  0.0000000994   389-414   CCCH zinc finger  
ENSRNOP00000064751   0.000000628   46-72   CCCH zinc finger  
ENSRNOP00000066942   0.000000000222   185-221   CCCH zinc finger  
  0.000000000458   148-183   CCCH zinc finger  
ENSRNOP00000067824   0.00000209   21-42   CCCH zinc finger  
  0.0000288   130-155   CCCH zinc finger  
  0.00144   288-316   CCCH zinc finger  
 
Weak hits:
ENSRNOP00000003309   0.0163   578-608   CCCH zinc finger  
  0.0294   452-480   CCCH zinc finger  
ENSRNOP00000004025   0.0204   5-26   CCCH zinc finger  
ENSRNOP00000009695   0.011   7-26   CCCH zinc finger  
ENSRNOP00000011481   0.00173   183-206   CCCH zinc finger  
ENSRNOP00000011824   0.0785   659-694   CCCH zinc finger  
ENSRNOP00000012314   0.0288   302-325   CCCH zinc finger  
ENSRNOP00000012768   0.000772   163-186   CCCH zinc finger  
  0.000824   296-324   CCCH zinc finger  
ENSRNOP00000013255   0.000106   290-316   CCCH zinc finger  
ENSRNOP00000013297   0.000103   290-316   CCCH zinc finger  
ENSRNOP00000013865   0.000294   2-22   CCCH zinc finger  
ENSRNOP00000014300   0.00408   178-202   CCCH zinc finger  
  0.0104   16-39   CCCH zinc finger  
ENSRNOP00000015387   0.0091   239-263   CCCH zinc finger  
ENSRNOP00000016638   0.0162   412-435   CCCH zinc finger  
ENSRNOP00000025138   0.00201   11-32   CCCH zinc finger  
ENSRNOP00000030053   0.000196   257-282   CCCH zinc finger  
ENSRNOP00000030286   0.000353   16-40   CCCH zinc finger  
  0.000565   151-173   CCCH zinc finger  
ENSRNOP00000033304   0.00262   180-204   CCCH zinc finger  
  0.0196   13-42   CCCH zinc finger  
  0.0563   214-238   CCCH zinc finger  
ENSRNOP00000035970   0.000222   257-282   CCCH zinc finger  
ENSRNOP00000039018   0.00235   176-200   CCCH zinc finger  
  0.0298   211-237   CCCH zinc finger  
  0.0361   17-40   CCCH zinc finger  
ENSRNOP00000041377   0.000589   185-207   CCCH zinc finger  
ENSRNOP00000045289   0.0136   355-379   CCCH zinc finger  
ENSRNOP00000046140   0.0243   192-218   CCCH zinc finger  
ENSRNOP00000049816   0.000406   156-181   CCCH zinc finger  
  0.000733   291-319   CCCH zinc finger  
ENSRNOP00000056947   0.000209   257-282   CCCH zinc finger  
ENSRNOP00000058705   0.000222   136-158   CCCH zinc finger  
  0.000432   40-61   CCCH zinc finger  
ENSRNOP00000059263   0.0392   262-282   CCCH zinc finger  
ENSRNOP00000062068   0.000103   290-316   CCCH zinc finger  
ENSRNOP00000066698   0.00267   111-141   CCCH zinc finger  
ENSRNOP00000067005   0.000392   16-40   CCCH zinc finger  
  0.000581   150-173   CCCH zinc finger  

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Select to display   Genome       Domains   Proteins
No Yes ALL   129352 129352
No Yes Homo sapiens 76_38 Human 152 112
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 50 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 70 45
No Yes Pongo abelii 76_2 Sumatran orangutan 47 31
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 53 36
No Yes Papio anubis 76 Olive baboon 62 36
No Yes Macaca mulatta 76_1 Rhesus monkey 63 47
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 96 63
No Yes Otolemur garnettii 76_3 Small-eared galago 46 31
No Yes Microcebus murinus 76_1 Gray mouse lemur 25 15
No Yes Rattus norvegicus 76_5.0 Norway rat 59 37
No Yes Mus musculus 76_38 House mouse 97 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 29 21
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 45 28
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 40 29
No Yes Cavia porcellus 76_3 Domestic guinea pig 46 28
No Yes Oryctolagus cuniculus 76_2 Rabbit 47 31
No Yes Ochotona princeps 76 American pika 26 16
No Yes Tupaia belangeri 76 Northern tree shrew 25 19
No Yes Sus scrofa 76_10.2 Pig 47 33
No Yes Bos taurus 76_3.1 Cattle 46 29
No Yes Ovis aries 76_3.1 Sheep 43 30
No Yes Vicugna pacos 76_1 Alpaca 22 16
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 33 24
No Yes Mustela putorius furo 76_1.0 Domestic ferret 47 30
No Yes Ailuropoda melanoleuca 76_1 Giant panda 44 31
No Yes Canis familiaris 76_3.1 Dog 57 38
No Yes Felis catus 76_6.2 Domestic cat 45 31
No Yes Equus caballus 76_2 Horse 33 24
No Yes Myotis lucifugus 76_2.0 Little brown bat 39 28
No Yes Pteropus vampyrus 76_1 Large flying fox 38 24
No Yes Sorex araneus 76_1 European shrew 23 16
No Yes Erinaceus europaeus 76 Western European hedgehog 24 18
No Yes Procavia capensis 76_1 Cape rock hyrax 38 26
No Yes Loxodonta africana 76_3 African savanna elephant 54 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 20 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 50 33
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 21 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 25 18
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 35 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 39 28
No Yes Ornithorhynchus anatinus 76_5 Platypus 36 26
No Yes Saccoglossus kowalevskii v3.0   33 30
No Yes Petromyzon marinus 76_7.0 Sea lamprey 13 13
No Yes Meleagris gallopavo 76_2 Turkey 26 21
No Yes Gallus gallus 76_4 Chicken 26 19
No Yes Anas platyrhynchos 76_1.0 Mallard 30 21
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 31 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 33 22
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 33 22
No Yes Anolis carolinensis 76_2.0 Green anole 30 21
No Yes Xenopus laevis African clawed frog 124 73
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 61 37
No Yes Latimeria chalumnae 76_1 Coelacanth 55 41
No Yes Lepisosteus oculatus 76 Spotted gar 50 35
No Yes Gadus morhua 76_1 Atlantic cod 43 32
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 53 34
No Yes Takifugu rubripes 76_4 Torafugu 133 91
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 54 37
No Yes Oryzias latipes 76_1 Japanese medaka 46 33
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 53 34
No Yes Poecilia formosa 76 Amazon molly 54 34
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 63 41
No Yes Astyanax mexicanus 76 Mexican tetra 56 38
No Yes Danio rerio 76_9 Zebrafish 97 67
No Yes Oikopleura dioica   19 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 31 19
No Yes Ciona intestinalis 76 Vase tunicate 24 15
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 24 19
No Yes Adineta vaga   52 38
No Yes Octopus bimaculoides 280   20 17
No Yes Crassostrea gigas 22 Pacific oyster 20 17
No Yes Lottia gigantea Owl limpet 29 21
No Yes Helobdella robusta   23 17
No Yes Capitella sp. I   32 20
No Yes Danaus plexippus OGS1.0 Monarch butterfly 19 14
No Yes Heliconius melpomene Postman butterfly 19 14
No Yes Bombyx mori Domestic silkworm 18 13
No Yes Nasonia vitripennis Jewel wasp 18 12
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 44 32
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 20 14
No Yes Linepithema humile v1.1 Argentine ant 20 14
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 18 13
No Yes Solenopsis invicta v.2.2.3 Red fire ant 13 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 21 15
No Yes Atta cephalotes v1.1   20 14
No Yes Camponotus floridanus v3.3 Florida carpenter ant 22 16
No Yes Lucilia cuprina Australian sheep blowfly 16 14
No Yes Drosophila grimshawi 1.3   16 14
No Yes Drosophila willistoni 1.3   12 10
No Yes Drosophila pseudoobscura 2.13   15 13
No Yes Drosophila persimilis 1.3   14 12
No Yes Drosophila suzukii   16 14
No Yes Drosophila yakuba 1.3   14 12
No Yes Drosophila simulans 1.3   11 10
No Yes Drosophila sechellia 1.3   16 14
No Yes Drosophila melanogaster 76_5 Fruit fly 35 31
No Yes Drosophila erecta 1.3   15 13
No Yes Drosophila ananassae 1.3   15 13
No Yes Drosophila virilis 1.2   13 12
No Yes Drosophila mojavensis 1.3   15 13
No Yes Megaselia scalaris 22   6 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 20 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 16 12
No Yes Anopheles darlingi 22 American malaria mosquito 13 10
No Yes Anopheles gambiae 49_3j African malaria mosquito 12 10
No Yes Tribolium castaneum 3.0 Red flour beetle 18 14
No Yes Pediculus humanus corporis (Early assembly) Human body louse 14 11
No Yes Acyrthosiphon pisum Pea aphid 16 12
No Yes Rhodnius prolixus 22   11 10
No Yes Daphnia pulex Common water flea 21 16
No Yes Strigamia maritima 22   28 22
No Yes Sarcoptes scabiei   21 16
No Yes Tetranychus urticae Two-spotted spider mite 18 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 20 14
No Yes Pristionchus pacificus   24 17
No Yes Meloidogyne incognita Southern root-knot nematode 55 38
No Yes Meloidogyne hapla   28 19
No Yes Onchocerca volvulus 22   42 31
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 29
No Yes Caenorhabditis japonica   27 19
No Yes Caenorhabditis brenneri   36 25
No Yes Caenorhabditis remanei   33 23
No Yes Caenorhabditis elegans 76_235 Roundworm 60 39
No Yes Caenorhabditis briggsae 2   40 29
No Yes Trichinella spiralis 22   26 18
No Yes Hymenolepis microstoma   16 12
No Yes Echinococcus multilocularis   21 15
No Yes Echinococcus granulosus   20 14
No Yes Taenia solium Pork tapeworm 20 14
No Yes Schistosoma mansoni   29 18
No Yes Mnemiopsis leidyi Sea walnut 17 13
No Yes Thelohanellus kitauei   14 9
No Yes Acropora digitifera v1.0   23 20
No Yes Nematostella vectensis 1.0 Starlet sea anemone 22 19
No Yes Hydra vulgaris   22 18
No Yes Amphimedon queenslandica   26 17
No Yes Trichoplax adhaerens   10 8
No Yes Proterospongia sp. ATCC 50818   20 13
No Yes Monosiga brevicollis   14 10
No Yes Sphaeroforma arctica JP610   16 14
No Yes Capsaspora owczarzaki ATCC 30864   25 18
No Yes Conidiobolus coronatus NRRL28638 v1.0   16 11
No Yes Mortierella verticillata NRRL 6337   26 19
No Yes Phycomyces blakesleeanus   31 19
No Yes Rhizopus oryzae RA 99-880   25 15
No Yes Mucor circinelloides   22 15
No Yes Rhizomucor miehei CAU432   20 15
No Yes Malassezia globosa CBS 7966   12 10
No Yes Sporisorium reilianum 22   13 11
No Yes Ustilago maydis   12 9
No Yes Mixia osmundae IAM 14324 v1.0   12 9
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   13 11
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   8 7
No Yes Melampsora laricis-populina   16 12
No Yes Rhodotorula graminis WP1 v1.0   10 8
No Yes Sporobolomyces roseus IAM 13481   10 8
No Yes Microbotryum violaceum 22   13 10
No Yes Wallemia sebi v1.0   9 7
No Yes Sphaerobolus stellatus v1.0   19 13
No Yes Piloderma croceum F 1598 v1.0   20 16
No Yes Serpula lacrymans var. lacrymans S7.9   16 12
No Yes Coniophora puteana   18 14
No Yes Hydnomerulius pinastri v2.0   20 15
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   22 17
No Yes Pisolithus microcarpus 441 v1.0   29 16
No Yes Pisolithus tinctorius Marx 270 v1.0   41 20
No Yes Scleroderma citrinum Foug A v1.0   22 16
No Yes Coprinopsis cinerea okayama7 130 v3   17 14
No Yes Pleurotus ostreatus Oyster mushroom 22 17
No Yes Amanita thiersii Skay4041 v1.0   17 15
No Yes Amanita muscaria Koide v1.0 Fly agaric 24 18
No Yes Galerina marginata v1.0   23 16
No Yes Hebeloma cylindrosporum h7 v2.0   20 17
No Yes Laccaria bicolor S238N-H82   23 18
No Yes Agaricus bisporus var. bisporus   19 15
No Yes Schizophyllum commune   19 14
No Yes Stereum hirsutum FP-91666 SS1 v1.0   18 15
No Yes Heterobasidion annosum   15 12
No Yes Gloeophyllum trabeumv1.0   17 13
No Yes Punctularia strigosozonata v1.0   16 13
No Yes Sebacina vermifera MAFF 305830 v1.0   22 18
No Yes Fomitiporia mediterranea v1.0   22 16
No Yes Tulasnella calospora AL13/4D v1.0   30 21
No Yes Postia placenta   21 17
No Yes Wolfiporia cocos MD-104 SS10 v1.0   19 14
No Yes Fomitopsis pinicolav1.0   15 11
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   18 13
No Yes Phanerochaete chrysosporium RP-78 2.1   16 13
No Yes Dichomitus squalens   23 16
No Yes Trametes versicolor v1.0   21 15
No Yes Tremella mesenterica Witches' butter 8 8
No Yes Daldinia eschscholzii EC12 v1.0   15 13
No Yes Apiospora montagnei NRRL 25634 v1.0   18 15
No Yes Magnaporthe poae ATCC 64411 22   14 8
No Yes Magnaporthe grisea 70-15   11 8
No Yes Podospora anserina   15 11
No Yes Sporotrichum thermophile ATCC 42464   13 10
No Yes Thielavia terrestris NRRL 8126   15 12
No Yes Chaetomium globosum CBS 148.51   12 10
No Yes Neurospora tetrasperma   12 10
No Yes Neurospora discreta FGSC 8579   12 10
No Yes Neurospora crassa OR74A   14 11
No Yes Cryphonectria parasitica Chestnut blight fungus 12 9
No Yes Verticillium albo-atrum VaMs.102   9 7
No Yes Verticillium dahliae VdLs.17   12 9
No Yes Acremonium alcalophilumv 1.0   13 10
No Yes Glomerella graminicola 22   14 12
No Yes Fusarium graminearum   12 10
No Yes Nectria haematococca mpVI   13 11
No Yes Fusarium oxysporum f. sp. lycopersici 4286   14 12
No Yes Fusarium verticillioides 7600   13 10
No Yes Trichoderma asperellum CBS 433.97 v1.0   16 14
No Yes Trichoderma atroviride   13 11
No Yes Trichoderma citrinoviride v1.0   14 12
No Yes Trichoderma reesei 1.2   13 11
No Yes Trichoderma virens Gv29-8   15 11
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   14 12
No Yes Trichoderma harzianum CBS 226.95 v1.0   17 14
No Yes Amorphotheca resinae v1.0 Creosote fungus 19 13
No Yes Botrytis cinerea B05.10   18 11
No Yes Sclerotinia sclerotiorum   11 10
No Yes Blumeria graminis 22   11 8
No Yes Didymella exigua CBS 183.55 v1.0   11 10
No Yes Leptosphaeria maculans 22   13 12
No Yes Setosphaeria turcica v1.0   13 11
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   11 10
No Yes Cochliobolus victoriae FI3 v1.0   11 10
No Yes Cochliobolus carbonum 26-R-13 v1.0   11 10
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 9 8
No Yes Alternaria brassicicola   10 9
No Yes Cochliobolus lunatus m118 v2.0   12 10
No Yes Pyrenophora teres f. teres 22   12 11
No Yes Pyrenophora tritici-repentis   12 11
No Yes Stagonospora nodorum   11 10
No Yes Mycosphaerella graminicola IPO323   11 10
No Yes Zasmidium cellare ATCC 36951 v1.0   17 13
No Yes Dothistroma septosporum   11 10
No Yes Septoria musiva v1.0   14 11
No Yes Mycosphaerella fijiensis CIRAD86   11 10
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   9 9
No Yes Paracoccidioides brasiliensis Pb18   13 10
No Yes Coccidioides posadasii RMSCC 3488   13 10
No Yes Coccidioides immitis RS   14 11
No Yes Ajellomyces dermatitidis SLH14081   13 10
No Yes Histoplasma capsulatum class NAmI strain WU24   12 9
No Yes Microsporum canis CBS 113480   14 11
No Yes Trichophyton equinum CBS 127.97   12 9
No Yes Trichophyton verrucosum HKI 0517   9 7
No Yes Arthroderma benhamiae CBS 112371   10 8
No Yes Trichophyton tonsurans CBS 112818   10 8
No Yes Trichophyton rubrum CBS 118892   14 11
No Yes Uncinocarpus reesii 1704   12 9
No Yes Aspergillus zonatus v1.0   12 10
No Yes Penicillium chrysogenum Wisconsin 54-1255   14 11
No Yes Penicillium chrysogenum v1.0   12 10
No Yes Aspergillus acidus v1.0   12 10
No Yes Aspergillus fumigatus Af293   13 9
No Yes Aspergillus brasiliensis v1.0   10 8
No Yes Aspergillus nidulans FGSC A4   12 9
No Yes Aspergillus sydowii v1.0   12 9
No Yes Aspergillus versicolor v1.0   12 9
No Yes Aspergillus glaucus   11 9
No Yes Aspergillus carbonarius ITEM 5010   10 7
No Yes Neosartorya fischeri NRRL 181   15 11
No Yes Aspergillus terreus NIH2624   12 9
No Yes Aspergillus tubingensis v1.0   10 8
No Yes Aspergillus wentii v1.0   12 9
No Yes Aspergillus oryzae RIB40   10 9
No Yes Aspergillus niger 22   12 9
No Yes Aspergillus niger ATCC 1015   9 6
No Yes Aspergillus flavus NRRL3357   16 11
No Yes Aspergillus clavatus NRRL 1   13 9
No Yes Penicillium marneffei ATCC 18224   13 10
No Yes Tuber melanosporum Mel28 22   13 10
No Yes Tuber melanosporum Vittad Perigord truffle 13 10
No Yes Hansenula polymorpha v2.0   12 8
No Yes Dekkera bruxellensis CBS 2499 v2.0   9 7
No Yes Pichia membranifaciensv1.0   12 10
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   11 8
No Yes Candida dubliniensis CD36   11 8
No Yes Candida tropicalis MYA-3404   10 8
No Yes Candida parapsilosis   10 7
No Yes Candida albicans SC5314   10 8
No Yes Lodderomyces elongisporus NRRL YB-4239   8 6
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   11 8
No Yes Pichia stipitis CBS 6054   11 8
No Yes Candida guilliermondii ATCC 6260   10 8
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   11 9
No Yes Debaromyces hansenii   12 8
No Yes Wickerhamomyces anomalus   13 9
No Yes Pichia pastoris GS115   12 8
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   9 7
No Yes Yarrowia lipolytica CLIB122   12 10
No Yes Candida lusitaniae ATCC 42720   13 9
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   13 9
No Yes Vanderwaltozyma polyspora DSM 70294   9 7
No Yes Candida glabrata CBS138   9 7
No Yes Kluyveromyces thermotolerans CBS 6340   8 7
No Yes Lachancea kluyveri   10 7
No Yes Kluyveromyces waltii   8 6
No Yes Ashbya gossypii ATCC 10895   9 7
No Yes Zygosaccharomyces rouxii   8 7
No Yes Saccharomyces mikatae MIT   9 6
No Yes Saccharomyces paradoxus MIT   9 6
No Yes Saccharomyces cerevisiae 76 Baker's yeast 9 6
No Yes Saccharomyces bayanus MIT   10 7
No Yes Kluyveromyces lactis   8 6
No Yes Schizosaccharomyces cryophilus OY26 22   12 8
No Yes Schizosaccharomyces octosporus yFS286   11 8
No Yes Schizosaccharomyces japonicus yFS275   12 8
No Yes Schizosaccharomyces pombe Fission yeast 11 7
No Yes Catenaria anguillulae PL171 v1.0   13 10
No Yes Allomyces macrogynus ATCC 38327   26 23
No Yes Spizellomyces punctatus DAOM BR117   22 16
No Yes Dictyostelium discoideum   18 15
No Yes Dictyostelium purpureum   17 14
No Yes Entamoeba dispar 1.2   10 7
No Yes Entamoeba invadens 1.2   13 8
No Yes Entamoeba histolytica 1   8 5
No Yes Selaginella moellendorffii   71 44
No Yes Pinus taeda Loblolly pine 62 32
No Yes Picea abies Norway spruce 59 28
No Yes Eucalyptus grandis v201 Rose gum 156 86
No Yes Theobroma cacao B97-61/B2 v1 Cacao 95 51
No Yes Gossypium raimondii v221   381 178
No Yes Citrus clementina v165   195 85
No Yes Citrus sinensis v154 Sweet orange 171 99
No Yes Thellungiella halophila v173   138 60
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 182 85
No Yes Capsella rubella v183   119 52
No Yes Arabidopsis lyrata Lyrate rockcress 108 51
No Yes Arabidopsis thaliana 10 Thale cress 142 63
No Yes Carica papaya Papaya 63 36
No Yes Medicago truncatula Barrel medic 182 91
No Yes Phaseolus vulgaris v186 French bean 135 64
No Yes Glycine max v109 Soybean 259 124
No Yes Cucumis sativus v122 Cucumber 129 72
No Yes Fragaria vesca Wild strawberry 75 38
No Yes Malus domestica v196 Apple 192 105
No Yes Prunus persica v139 Peach 103 52
No Yes Linum usitatissimum v200 Flax 153 80
No Yes Manihot esculenta v147 Cassava 153 79
No Yes Populus trichocarpa v156 Black cottonwood 131 63
No Yes Vitis vinifera Wine grape 88 47
No Yes Mimulus guttatus v140 Spotted monkey flower 128 57
No Yes Solanum lycopersicum v.2.3 Tomato 104 53
No Yes Solanum tuberosum Potato 168 85
No Yes Actinidia chinensis Hongyang   137 79
No Yes Aquilegia coerulea v195   182 88
No Yes Triticum urartu 22   63 33
No Yes Triticum aestivum 22 Bread wheat 175 99
No Yes Aegilops tauschii 22   61 34
No Yes Brachypodium distachyon Stiff brome 124 55
No Yes Oryza barthii 22 African wild rice 110 62
No Yes Oryza meridionalis 22   118 62
No Yes Oryza glumaepatula 22   139 74
No Yes Oryza glaberrima African rice 90 43
No Yes Oryza punctata 22   147 78
No Yes Oryza nivara 22   131 67
No Yes Oryza brachyantha 22 Malo sina 89 44
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 159 80
No Yes Oryza sativa v193 Rice 159 80
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 116 69
No Yes Panicum virgatum v202 Switchgrass 191 103
No Yes Setaria italica v164 Foxtail millet 118 65
No Yes Zea mays subsp. mays Maize 247 114
No Yes Zea mays v181 Maize 268 127
No Yes Sorghum bicolor Sorghum 74 45
No Yes Musa balbisiana Balbis banana 123 68
No Yes Musa acuminata 22 Wild Malaysian banana 149 71
No Yes Amborella trichopoda 22   71 36
No Yes Physcomitrella patens   54 31
No Yes Coccomyxa subellipsoidea sp. C-169 v2   18 15
No Yes Asterochloris sp. Cgr/DA1pho v1.0   25 18
No Yes Chlorella variabilis sp. NC64A   32 24
No Yes Chlorella vulgaris   10 9
No Yes Volvox carteri f. nagariensis   24 18
No Yes Volvox carteri v199   18 14
No Yes Chlamydomonas reinhardtii 4.0   24 16
No Yes Ostreococcus sp. RCC809   15 12
No Yes Ostreococcus lucimarinus CCE9901   20 15
No Yes Ostreococcus tauri   16 12
No Yes Bathycoccus prasinos   16 14
No Yes Micromonas sp. RCC299   23 17
No Yes Micromonas pusilla CCMP1545 v3.0   19 17
No Yes Cyanidioschyzon merolae strain 10D 22   9 5
No Yes Cyanidioschyzon merolae   10 6
No Yes Porphyridium purpureum 02_2012   13 10
No Yes Thecamonas trahens ATCC 50062   14 11
No Yes Bigelowiella natans CCMP2755 22   27 20
No Yes Giardia lamblia 2.3   4 3
No Yes Cyanophora paradoxa   27 21
No Yes Leishmania mexicana 2.4   21 20
No Yes Leishmania major strain Friedlin   25 24
No Yes Leishmania infantum JPCM5 2.4   24 23
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   22 21
No Yes Trypanosoma vivax   18 18
No Yes Trypanosoma cruzi strain CL Brener   20 20
No Yes Trypanosoma congolense 2.4   23 23
No Yes Trypanosoma brucei gambiense v4.1   20 20
No Yes Trypanosoma brucei TREU927 v4.1   20 20
No Yes Ectocarpus siliculosus   21 14
No Yes Aureococcus anophagefferens   9 8
No Yes Albugo laibachii 22   31 23
No Yes Pythium iwayamai DAOM BR242034 22   28 22
No Yes Pythium arrhenomanes ATCC 12531 22   33 21
No Yes Pythium ultimum v1.7-2   33 22
No Yes Pythium aphanidermatum DAOM BR444 22   33 20
No Yes Pythium irregulare DAOM BR486 22   35 23
No Yes Pythium vexans DAOM BR484 22   36 23
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 27 18
No Yes Phytophthora sojae 1.1   33 26
No Yes Phytophthora infestans T30-4   36 23
No Yes Phytophthora capsici   30 19
No Yes Hyaloperonospora arabidopsidis 22   32 23
No Yes Phaeodactylum tricornutumCCAP 1055/1   18 12
No Yes Fragilariopsis cylindrus   29 21
No Yes Thalassiosira pseudonana CCMP1335   18 13
No Yes Perkinsus marinus ATCC 50983   163 125
No Yes Paramecium tetraurelia   111 67
No Yes Tetrahymena thermophila SB210 1   48 29
No Yes Ichthyophthirius multifiliis strain G5   24 12
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   16 10
No Yes Cryptosporidium parvum Iowa II   13 9
No Yes Neospora caninum   39 24
No Yes Toxoplasma gondii VEG   39 22
No Yes Toxoplasma gondii ME49   40 22
No Yes Toxoplasma gondii GT1   40 22
No Yes Babesia bovis T2Bo   20 20
No Yes Theileria parva   10 9
No Yes Theileria annulata   10 9
No Yes Plasmodium falciparum 3D7   19 12
No Yes Plasmodium vivax SaI-1 7.0   16 11
No Yes Plasmodium knowlesi strain H   17 11
No Yes Plasmodium yoelii ssp. yoelii 1   12 8
No Yes Plasmodium chabaudi   17 11
No Yes Plasmodium berghei ANKA   17 11
No Yes Symbiodinium minutum clade B1 v1.2   212 144
No Yes Naegleria gruberi   12 9
No Yes Trichomonas vaginalis   11 10
No Yes Guillardia theta CCMP2712 v1.0   30 22
No Yes Emiliania huxleyi CCMP1516   50 44
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 121 74
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 25 22
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 17 14
No Yes Ascaris suum Victoria/Ghent Pig roundworm 36 25
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 51 32
No Yes Cryptococcus neoformans var. grubii H99   15 12
No Yes Cryptococcus neoformans B-3501A   16 12
No Yes Cryptococcus neoformans JEC21   12 11
No Yes Paracoccidioides brasiliensis Pb01   12 9
No Yes Paracoccidioides brasiliensis Pb03   9 8
No Yes Coccidioides posadasii str. Silveira   15 11
No Yes Coccidioides immitis RMSCC 3703   10 8
No Yes Coccidioides immitis RMSCC 2394   13 10
No Yes Coccidioides immitis H538.4   12 9
No Yes Ajellomyces dermatitidis ER-3   13 10
No Yes Histoplasma capsulatum H143   13 10
No Yes Histoplasma capsulatum H88   13 10
No Yes Histoplasma capsulatum G186AR   14 11
No Yes Aspergillus fumigatus A1163   15 11
No Yes Candida albicans WO-1   10 8
No Yes Saccharomyces cerevisiae UC5   9 6
No Yes Saccharomyces cerevisiae PW5   9 6
No Yes Saccharomyces cerevisiae FL100   4 3
No Yes Saccharomyces cerevisiae CLIB324   5 4
No Yes Saccharomyces cerevisiae CBS7960   8 5
No Yes Saccharomyces cerevisiae YJM269   9 6
No Yes Saccharomyces cerevisiae T7   9 6
No Yes Saccharomyces cerevisiae FostersB   8 5
No Yes Saccharomyces cerevisiae FostersO   6 4
No Yes Saccharomyces cerevisiae VL3   7 4
No Yes Saccharomyces cerevisiae Vin13   7 5
No Yes Saccharomyces cerevisiae LalvinQA23   7 4
No Yes Saccharomyces cerevisiae AWRI796   7 5
No Yes Saccharomyces cerevisiae Sigma1278b   9 6
No Yes Saccharomyces cerevisiae W303   9 6
No Yes Saccharomyces cerevisiae JAY291   9 6
No Yes Saccharomyces cerevisiae AWRI1631   5 4
No Yes Saccharomyces cerevisiae YPS163   5 3
No Yes Saccharomyces cerevisiae M22   3 2
No Yes Saccharomyces cerevisiae T73   6 4
No Yes Saccharomyces cerevisiae CLIB215   9 6
No Yes Saccharomyces cerevisiae Y10   4 3
No Yes Saccharomyces cerevisiae YJM789   9 6
No Yes Saccharomyces cerevisiae YJM789   9 6
No Yes Saccharomyces cerevisiae RM11-1a   9 6
No Yes Saccharomyces cerevisiae RM11-1a   9 6
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 9 6
No Yes Schizosaccharomyces pombe 972h-   11 7
No Yes Batrachochytrium dendrobatidis JEL423   17 13
No Yes Batrachochytrium dendrobatidis JAM81   15 11
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 86 47
No Yes Hordeum vulgare 22 Domesticated barley 195 91
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 85 50
No Yes Trypanosoma brucei Lister 427 v4.1   18 18
No Yes Neospora caninum Nc-Liverpool 6.2   39 24
No Yes Plasmodium falciparum HB3   17 11
No Yes Plasmodium falciparum Dd2   14 10
No Yes Homo sapiens 75_37 (old version GRC) Human 156 117
No Yes Homo sapiens (NCBI version) Human 63 43
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 48 32
No Yes Heliconius numata (Incomplete)   10 9
No Yes Loa loa v3.3 (Request) Eye worm 33 23
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 36 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 25 19
No Yes Moniliophthora perniciosa FA553 (Genome survey)   4 4
No Yes Encephalitozoon intestinalis (endoparasite)   8 6
No Yes Encephalitozoon cuniculi (endoparasite)   8 6
No Yes Picea sitchensis (Incomplete) Sitka spruce 7 3
No Yes Lotus japonicus (Early assembly)   83 47
No Yes Malus x domestica (Duplicate) Apple 192 105
No Yes Ricinus communis (Early assembly) Castor bean 77 36
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   187 91
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 50
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 104 53
No Yes Phoenix dactylifera (Early draft) Date palm 40 26
No Yes Homo sapiens 69_37 Human 60 43
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 48 31
No Yes Gorilla gorilla 69_3.1 Western gorilla 47 31
No Yes Pongo abelii 69_2 Sumatran orangutan 43 29
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 45 31
No Yes Macaca mulatta 69_1 Rhesus monkey 39 28
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 48 32
No Yes Otolemur garnettii 69_3 Small-eared galago 45 30
No Yes Microcebus murinus 69_1 Gray mouse lemur 25 15
No Yes Rattus norvegicus 69_3.4 Norway rat 54 34
No Yes Mus musculus 69_38 House mouse 48 32
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 29 21
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 27
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 28
No Yes Oryctolagus cuniculus 69_2 Rabbit 40 28
No Yes Ochotona princeps 69 American pika 26 16
No Yes Tupaia belangeri 69 Northern tree shrew 25 19
No Yes Sus scrofa 69_10.2 Pig 45 31
No Yes Bos taurus 69_3.1 Cattle 41 26
No Yes Vicugna pacos 69_1 Alpaca 22 16
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 33 24
No Yes Mustela putorius furo 69_1.0 Domestic ferret 45 29
No Yes Ailuropoda melanoleuca 69_1 Giant panda 42 29
No Yes Canis familiaris 69_3.1 Dog 44 29
No Yes Felis catus 69 Domestic cat 22 19
No Yes Equus caballus 69_2 Horse 32 23
No Yes Myotis lucifugus 69_2.0 Little brown bat 39 28
No Yes Pteropus vampyrus 69_1 Large flying fox 38 24
No Yes Sorex araneus 69_1 European shrew 23 16
No Yes Erinaceus europaeus 69 Western European hedgehog 24 18
No Yes Procavia capensis 69_1 Cape rock hyrax 38 26
No Yes Loxodonta africana 69_3 African savanna elephant 38 25
No Yes Echinops telfairi 69 Small Madagascar hedgehog 20 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 25 16
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 21 15
No Yes Macropus eugenii 69_1.0 Tammar wallaby 25 18
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 30 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 39 28
No Yes Ornithorhynchus anatinus 69_5 Platypus 30 22
No Yes Petromyzon marinus 69_7.0 Sea lamprey 13 13
No Yes Meleagris gallopavo 69_2 Turkey 23 18
No Yes Gallus gallus 69_2 Chicken 28 21
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 29 22
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 30 21
No Yes Anolis carolinensis 69_2.0 Green anole 27 20
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 49 29
No Yes Latimeria chalumnae 69_1 Coelacanth 40 28
No Yes Gadus morhua 69_1 Atlantic cod 41 30
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 44 28
No Yes Takifugu rubripes 69_4 Torafugu 44 29
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 43 29
No Yes Oryzias latipes 69_1 Japanese medaka 39 29
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 53 34
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 47 31
No Yes Danio rerio 69_9 Zebrafish 60 41
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 18 14
No Yes Ciona intestinalis 69 Vase tunicate 24 15
No Yes Drosophila melanogaster 69_5 Fruit fly 19 17
No Yes Caenorhabditis elegans 69_215 Roundworm 46 28
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 9 6
No Yes Arabidopsis thaliana 10 Thale cress 98 46
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes NCBI 2017_08 genome   44217 28363
No Yes Protozoadb 2010_08 (Protozoadb)   558 421
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   3235 2172
No Yes Uniprot 2018_03 genome   46149 30350
No Yes Global Ocean Sampling Expedition (GOS)   255 218
No Yes NCBI viral sequences (Viral)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   7 4
No Yes Protein Data Bank (all PDB sequenc)   90 83
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   101 101
No Yes TargetDB (Targets)   139 102
No Yes UniProt viral sequences (Viral)   44 44

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