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LDL receptor-like module superfamily domain assignments
in
Pelodiscus sinensis 69_1.0

Assignment details

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Pelodiscus sinensis 69_1.0 has 175 significant domains in 46 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPSIP00000000981   0.000000000576   6-40   LDL receptor-like module  
ENSPSIP00000002341   0.000000000000707   1323-1362   LDL receptor-like module  
  0.0000000000353   1103-1141   LDL receptor-like module  
  0.0000000000419   1060-1101   LDL receptor-like module  
  0.0000000000484   1230-1267   LDL receptor-like module  
  0.000000000327   1277-1311   LDL receptor-like module  
  0.0000000017   984-1021   LDL receptor-like module  
  0.00000000458   1146-1179   LDL receptor-like module  
  0.0000000223   1377-1414   LDL receptor-like module  
  0.0000000524   1023-1062   LDL receptor-like module  
  0.00000223   1419-1455   LDL receptor-like module  
  0.00000327   1182-1218   LDL receptor-like module  
ENSPSIP00000003066   0.000000628   48-84   LDL receptor-like module  
  0.00000432   96-126   LDL receptor-like module  
  0.011   133-173   LDL receptor-like module  
ENSPSIP00000003123   0.0000000223   243-279   LDL receptor-like module  
  0.0000000537   281-318   LDL receptor-like module  
ENSPSIP00000003295   0.0000000275   291-327   LDL receptor-like module  
ENSPSIP00000003937   0.0000000327   102-143   LDL receptor-like module  
ENSPSIP00000004035   0.000000367   124-164   LDL receptor-like module  
ENSPSIP00000005509   0.00000314   471-503   LDL receptor-like module  
  0.0000628   437-469   LDL receptor-like module  
  0.000252   508-546   LDL receptor-like module  
ENSPSIP00000006301   0.0000000115   62-100   LDL receptor-like module  
ENSPSIP00000006337   0.0000000000288   5-44   LDL receptor-like module  
ENSPSIP00000006366   0.000000196   8-43   LDL receptor-like module  
ENSPSIP00000006715   0.0000000353   33-70   LDL receptor-like module  
ENSPSIP00000006718   0.000000000236   807-845   LDL receptor-like module  
  0.000000000249   766-808   LDL receptor-like module  
  0.000000000275   892-928   LDL receptor-like module  
  0.00000000034   3519-3555   LDL receptor-like module  
  0.000000000419   3240-3280   LDL receptor-like module  
  0.000000000497   3480-3517   LDL receptor-like module  
  0.000000000733   3561-3605   LDL receptor-like module  
  0.000000000746   727-767   LDL receptor-like module  
  0.000000000969   3358-3398   LDL receptor-like module  
  0.00000000122   2777-2817   LDL receptor-like module  
  0.00000000122   2568-2604   LDL receptor-like module  
  0.00000000131   2647-2683   LDL receptor-like module  
  0.00000000262   3323-3359   LDL receptor-like module  
  0.00000000301   3203-3237   LDL receptor-like module  
  0.00000000327   2690-2724   LDL receptor-like module  
  0.00000000511   3440-3476   LDL receptor-like module  
  0.00000000589   941-976   LDL receptor-like module  
  0.0000000109   3282-3319   LDL receptor-like module  
  0.0000000114   2474-2514   LDL receptor-like module  
  0.0000000128   2433-2474   LDL receptor-like module  
  0.000000017   3397-3437   LDL receptor-like module  
  0.0000000314   2727-2767   LDL receptor-like module  
  0.000000038   2607-2644   LDL receptor-like module  
  0.000000275   2530-2563   LDL receptor-like module  
  0.000000288   2397-2435   LDL receptor-like module  
  0.000000301   1022-1058   LDL receptor-like module  
  0.000000484   851-891   LDL receptor-like module  
  0.000000524   987-1019   LDL receptor-like module  
  0.0000367   3607-3639   LDL receptor-like module  
ENSPSIP00000006796   0.00000000106   531-570   LDL receptor-like module  
  0.00000000183   456-493   LDL receptor-like module  
  0.0000000119   219-256   LDL receptor-like module  
  0.0000000183   145-182   LDL receptor-like module  
  0.000000021   181-219   LDL receptor-like module  
  0.0000000288   257-290   LDL receptor-like module  
  0.000000157   496-528   LDL receptor-like module  
ENSPSIP00000007154   0.00000000432   33-70   LDL receptor-like module  
  0.000000209   2-33   LDL receptor-like module  
ENSPSIP00000007312   0.00000000000327   85-123   LDL receptor-like module  
  0.00000825   24-56   LDL receptor-like module  
  0.000602   2-25   LDL receptor-like module  
ENSPSIP00000007366   0.0000903   69-109   LDL receptor-like module  
  0.000144   32-67   LDL receptor-like module  
ENSPSIP00000008086   0.000000000012   127-166   LDL receptor-like module  
  0.0000000000262   43-78   LDL receptor-like module  
  0.0000000000916   78-114   LDL receptor-like module  
  0.0000000000929   164-204   LDL receptor-like module  
  0.0000000183   3-40   LDL receptor-like module  
ENSPSIP00000008099   0.00000000183   467-507   LDL receptor-like module  
  0.000000089   510-548   LDL receptor-like module  
  0.0000017   556-586   LDL receptor-like module  
ENSPSIP00000008191   0.0000000000707   69-104   LDL receptor-like module  
  0.000000000687   138-178   LDL receptor-like module  
  0.0000000419   179-214   LDL receptor-like module  
  0.000000367   103-140   LDL receptor-like module  
  0.0000144   34-61   LDL receptor-like module  
ENSPSIP00000009973   0.000000000707   1174-1212   LDL receptor-like module  
  0.00000000275   1096-1134   LDL receptor-like module  
  0.00000000524   1136-1172   LDL receptor-like module  
ENSPSIP00000010096   0.0000000000144   29-65   LDL receptor-like module  
ENSPSIP00000010413   0.00000000471   459-494   LDL receptor-like module  
  0.0000000183   525-561   LDL receptor-like module  
  0.00000771   567-606   LDL receptor-like module  
  0.0000524   494-527   LDL receptor-like module  
ENSPSIP00000010445   0.000000000301   1304-1339   LDL receptor-like module  
  0.00000000122   1266-1302   LDL receptor-like module  
  0.00000000236   1225-1265   LDL receptor-like module  
ENSPSIP00000010892   0.00000000000471   207-246   LDL receptor-like module  
  0.0000000000157   122-161   LDL receptor-like module  
  0.000000000038   5-40   LDL receptor-like module  
  0.0000000000628   245-285   LDL receptor-like module  
  0.00000000038   160-198   LDL receptor-like module  
  0.00000000183   44-82   LDL receptor-like module  
  0.0000000124   80-122   LDL receptor-like module  
  0.000000034   290-327   LDL receptor-like module  
ENSPSIP00000010950   0.0000055   244-277   LDL receptor-like module  
ENSPSIP00000011747   0.0000000000144   446-484   LDL receptor-like module  
  0.000000000759   162-199   LDL receptor-like module  
  0.000000183   407-445   LDL receptor-like module  
  0.000000196   208-250   LDL receptor-like module  
  0.00000119   370-406   LDL receptor-like module  
ENSPSIP00000012007   0.00000000034   105-142   LDL receptor-like module  
  0.000000000851   65-102   LDL receptor-like module  
  0.000000275   24-52   LDL receptor-like module  
ENSPSIP00000013370   0.0000000000484   380-418   LDL receptor-like module  
ENSPSIP00000014271   0.000000458   108-139   LDL receptor-like module  
ENSPSIP00000014475   0.0000000034   268-308   LDL receptor-like module  
  0.0000000107   29-67   LDL receptor-like module  
ENSPSIP00000014572   0.0000000471   302-338   LDL receptor-like module  
ENSPSIP00000015642   0.00000000144   317-357   LDL receptor-like module  
ENSPSIP00000016249   0.0000137   78-119   LDL receptor-like module  
ENSPSIP00000016894   0.0000000000183   440-478   LDL receptor-like module  
  0.0000000000406   160-198   LDL receptor-like module  
  0.0000000903   206-246   LDL receptor-like module  
  0.00000113   401-439   LDL receptor-like module  
  0.00000707   363-400   LDL receptor-like module  
ENSPSIP00000016905   0.0000000327   205-238   LDL receptor-like module  
  0.00694   1-20   LDL receptor-like module  
ENSPSIP00000017803   0.0000000000038   2695-2737   LDL receptor-like module  
  0.0000000000209   1226-1267   LDL receptor-like module  
  0.0000000000445   1026-1063   LDL receptor-like module  
  0.0000000000497   2863-2900   LDL receptor-like module  
  0.0000000000641   1067-1104   LDL receptor-like module  
  0.0000000000707   65-107   LDL receptor-like module  
  0.000000000144   3588-3628   LDL receptor-like module  
  0.000000000157   2947-2989   LDL receptor-like module  
  0.000000000249   2987-3029   LDL receptor-like module  
  0.000000000432   180-220   LDL receptor-like module  
  0.000000000497   983-1021   LDL receptor-like module  
  0.000000000668   3680-3715   LDL receptor-like module  
  0.000000000668   3886-3923   LDL receptor-like module  
  0.000000000812   3471-3507   LDL receptor-like module  
  0.00000000111   1108-1145   LDL receptor-like module  
  0.00000000114   3758-3796   LDL receptor-like module  
  0.00000000157   3546-3590   LDL receptor-like module  
  0.00000000157   2659-2697   LDL receptor-like module  
  0.00000000249   146-183   LDL receptor-like module  
  0.00000000471   3801-3837   LDL receptor-like module  
  0.00000000524   3508-3550   LDL receptor-like module  
  0.0000000072   29-65   LDL receptor-like module  
  0.00000000733   3034-3071   LDL receptor-like module  
  0.0000000109   1146-1184   LDL receptor-like module  
  0.0000000127   1190-1225   LDL receptor-like module  
  0.0000000223   2774-2819   LDL receptor-like module  
  0.000000038   2904-2948   LDL receptor-like module  
  0.0000000668   3718-3756   LDL receptor-like module  
  0.000000144   110-144   LDL receptor-like module  
  0.000000209   3642-3675   LDL receptor-like module  
  0.000000353   1271-1307   LDL receptor-like module  
  0.000000641   3843-3881   LDL receptor-like module  
  0.00000419   2743-2779   LDL receptor-like module  
  0.0038   2819-2857   LDL receptor-like module  
  0.0038   1-27   LDL receptor-like module  
ENSPSIP00000018179   0.00000000236   137-170   LDL receptor-like module  
ENSPSIP00000018496   0.000000000314   92-132   LDL receptor-like module  
  0.000000000406   140-179   LDL receptor-like module  
  0.00000209   182-219   LDL receptor-like module  
ENSPSIP00000018792   0.0000000000654   650-688   LDL receptor-like module  
  0.000000055   184-225   LDL receptor-like module  
ENSPSIP00000019489   0.0000000000668   307-343   LDL receptor-like module  
  0.0000000000772   226-264   LDL receptor-like module  
  0.0000000000785   262-302   LDL receptor-like module  
  0.00000000038   141-180   LDL receptor-like module  
  0.00000000055   64-103   LDL receptor-like module  
  0.0000000034   185-223   LDL receptor-like module  
  0.00000000654   103-140   LDL receptor-like module  
  0.00000157   24-66   LDL receptor-like module  
ENSPSIP00000019560   0.000000000929   11-48   LDL receptor-like module  
ENSPSIP00000019685   0.000000000072   449-486   LDL receptor-like module  
  0.0000000236   526-567   LDL receptor-like module  
  0.0000497   485-521   LDL receptor-like module  
ENSPSIP00000019711   0.00000000105   189-226   LDL receptor-like module  
  0.0000000772   264-306   LDL receptor-like module  
  0.000432   226-262   LDL receptor-like module  
ENSPSIP00000019840   0.00000000327   139-181   LDL receptor-like module  
ENSPSIP00000020065   0.0000109   194-224   LDL receptor-like module  
 
Weak hits:
ENSPSIP00000016818   0.000131   30-62   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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