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DNA-binding pseudobarrel domain superfamily domain assignments
in
Musa balbisiana

Assignment details

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Musa balbisiana has 117 significant domains in 112 proteins.

     

Sequence ID   Evalue   Region   Family  
ITC1587_Bchr10_P29304   7.19e-27   123-231   B3 DNA binding domain  
ITC1587_Bchr10_P29997   4.51e-41   157-292   B3 DNA binding domain  
ITC1587_Bchr10_P30256   0.0000000000602   101-143   B3 DNA binding domain  
  0.0000000000968   197-251   B3 DNA binding domain  
ITC1587_Bchr10_P30342   6.54e-42   210-348   B3 DNA binding domain  
ITC1587_Bchr10_P30636   6.15e-32   159-263   B3 DNA binding domain  
ITC1587_Bchr10_P31184   9.16e-41   130-237   B3 DNA binding domain  
ITC1587_Bchr11_P31735   1.57e-28   106-215   B3 DNA binding domain  
ITC1587_Bchr11_P31828   1.47e-32   115-273   B3 DNA binding domain  
ITC1587_Bchr11_P31927   4.05e-30   63-171   B3 DNA binding domain  
ITC1587_Bchr11_P32264   4.45e-28   185-281   B3 DNA binding domain  
ITC1587_Bchr11_P32944   1.83e-30   40-145   B3 DNA binding domain  
ITC1587_Bchr11_P33689   1.44e-28   112-186   B3 DNA binding domain  
ITC1587_Bchr11_P33945   2.49e-28   66-157   B3 DNA binding domain  
ITC1587_Bchr11_P34074   3.27e-28   273-377   B3 DNA binding domain  
ITC1587_Bchr11_P34308   3.53e-26   228-328   B3 DNA binding domain  
ITC1587_Bchr1_P00338   3.53e-30   72-182   B3 DNA binding domain  
ITC1587_Bchr1_P00512   2.75e-30   214-322   B3 DNA binding domain  
ITC1587_Bchr1_P00747   1.44e-17   118-198   B3 DNA binding domain  
ITC1587_Bchr1_P01679   2.35e-21   78-177   B3 DNA binding domain  
ITC1587_Bchr1_P01757   6.28e-28   194-263   B3 DNA binding domain  
ITC1587_Bchr1_P01761   0.00000000000883   99-138   Type II restriction endonuclease effector domain  
ITC1587_Bchr1_P01763   4.19e-41   136-277   B3 DNA binding domain  
ITC1587_Bchr1_P01871   1.96e-30   150-258   B3 DNA binding domain  
ITC1587_Bchr2_P02989   3.01e-29   48-155   B3 DNA binding domain  
ITC1587_Bchr2_P03810   9.61e-23   5-104   B3 DNA binding domain  
ITC1587_Bchr2_P03950   1.67e-20   6-85   B3 DNA binding domain  
  9.61e-19   214-314   B3 DNA binding domain  
ITC1587_Bchr2_P04012   2.35e-30   60-170   B3 DNA binding domain  
ITC1587_Bchr2_P04692   0.0000000000000981   82-178   B3 DNA binding domain  
ITC1587_Bchr2_P04851   6.93e-18   123-187   B3 DNA binding domain  
ITC1587_Bchr2_P05096   1.12e-30   180-284   B3 DNA binding domain  
ITC1587_Bchr3_P05174   7.72e-20   189-285   B3 DNA binding domain  
ITC1587_Bchr3_P05650   1.96e-38   118-277   B3 DNA binding domain  
ITC1587_Bchr3_P06086   7.36e-39   120-284   B3 DNA binding domain  
ITC1587_Bchr3_P07228   9.16e-30   23-125   B3 DNA binding domain  
ITC1587_Bchr3_P07395   5.89e-32   176-279   B3 DNA binding domain  
ITC1587_Bchr3_P07606   3.79e-48   184-328   B3 DNA binding domain  
ITC1587_Bchr3_P08106   1.83e-32   175-278   B3 DNA binding domain  
ITC1587_Bchr3_P08274   2.22e-41   173-283   B3 DNA binding domain  
ITC1587_Bchr3_P08362   0.00000000000334   66-145   B3 DNA binding domain  
ITC1587_Bchr4_P08644   4.84e-40   109-208   B3 DNA binding domain  
ITC1587_Bchr4_P08726   1.44e-30   241-344   B3 DNA binding domain  
ITC1587_Bchr4_P08973   7.06e-32   166-269   B3 DNA binding domain  
ITC1587_Bchr4_P09330   1.07e-41   155-264   B3 DNA binding domain  
ITC1587_Bchr4_P09340   4.12e-25   29-125   B3 DNA binding domain  
  2.75e-20   240-342   B3 DNA binding domain  
ITC1587_Bchr4_P09492   3.79e-28   25-119   B3 DNA binding domain  
ITC1587_Bchr4_P10337   3.53e-28   624-731   B3 DNA binding domain  
ITC1587_Bchr4_P10840   4.05e-17   890-989   B3 DNA binding domain  
ITC1587_Bchr4_P10953   3.66e-29   67-171   B3 DNA binding domain  
ITC1587_Bchr4_P11036   8.89e-30   86-159   B3 DNA binding domain  
ITC1587_Bchr4_P11072   1.7e-29   11-119   B3 DNA binding domain  
ITC1587_Bchr4_P11389   2.09e-28   64-155   B3 DNA binding domain  
ITC1587_Bchr5_P11708   4.84e-49   235-379   B3 DNA binding domain  
ITC1587_Bchr5_P11862   2.09e-49   167-311   B3 DNA binding domain  
ITC1587_Bchr5_P12002   1.31e-28   106-215   B3 DNA binding domain  
ITC1587_Bchr5_P12101   4.32e-42   167-305   B3 DNA binding domain  
ITC1587_Bchr5_P12545   1.28e-30   183-288   B3 DNA binding domain  
ITC1587_Bchr5_P12569   1.7e-29   70-178   B3 DNA binding domain  
ITC1587_Bchr5_P12806   4.58e-29   59-168   B3 DNA binding domain  
ITC1587_Bchr5_P12964   3.27e-28   194-301   B3 DNA binding domain  
ITC1587_Bchr5_P13263   9.81e-16   3-82   B3 DNA binding domain  
  0.000000000000001   581-673   B3 DNA binding domain  
ITC1587_Bchr5_P13719   6.28e-29   114-221   B3 DNA binding domain  
ITC1587_Bchr5_P13909   3.4e-27   147-254   B3 DNA binding domain  
ITC1587_Bchr5_P14503   3.01e-49   60-204   B3 DNA binding domain  
ITC1587_Bchr5_P14628   0.0000275   289-340   B3 DNA binding domain  
ITC1587_Bchr6_P14906   5.36e-31   176-282   B3 DNA binding domain  
ITC1587_Bchr6_P14929   2.49e-43   146-286   B3 DNA binding domain  
ITC1587_Bchr6_P15445   1.31e-42   113-252   B3 DNA binding domain  
ITC1587_Bchr6_P15505   1.28e-28   155-272   B3 DNA binding domain  
ITC1587_Bchr6_P15660   2.88e-32   180-286   B3 DNA binding domain  
ITC1587_Bchr6_P15857   4.9e-20   36-133   B3 DNA binding domain  
  0.000000000000314   490-582   B3 DNA binding domain  
ITC1587_Bchr6_P15914   9.03e-42   1071-1211   B3 DNA binding domain  
ITC1587_Bchr6_P15947   3.53e-30   48-151   B3 DNA binding domain  
ITC1587_Bchr6_P16023   0.00000942   125-231   B3 DNA binding domain  
ITC1587_Bchr6_P16248   2.75e-41   155-291   B3 DNA binding domain  
ITC1587_Bchr6_P16420   6.02e-30   36-140   B3 DNA binding domain  
ITC1587_Bchr6_P16475   1.57e-28   117-224   B3 DNA binding domain  
ITC1587_Bchr6_P16586   2.88e-43   112-251   B3 DNA binding domain  
ITC1587_Bchr6_P17814   1.96e-41   116-256   B3 DNA binding domain  
ITC1587_Bchr6_P18406   6.8e-33   43-153   B3 DNA binding domain  
ITC1587_Bchr6_P18541   2.62e-34   171-278   B3 DNA binding domain  
ITC1587_Bchr7_P18560   2.35e-19   396-498   B3 DNA binding domain  
ITC1587_Bchr7_P18963   6.93e-29   33-124   B3 DNA binding domain  
ITC1587_Bchr7_P19556   8.37e-41   139-246   B3 DNA binding domain  
ITC1587_Bchr7_P21067   8.44e-23   649-744   B3 DNA binding domain  
ITC1587_Bchr7_P21184   0.00000353   167-200   B3 DNA binding domain  
ITC1587_Bchr7_P21270   3.4e-41   92-206   B3 DNA binding domain  
ITC1587_Bchr8_P21618   9.03e-16   691-777   B3 DNA binding domain  
ITC1587_Bchr8_P21787   0.00000000000118   391-514   B3 DNA binding domain  
ITC1587_Bchr8_P22553   3.92e-30   61-166   B3 DNA binding domain  
ITC1587_Bchr8_P22677   4.84e-41   191-297   B3 DNA binding domain  
ITC1587_Bchr8_P22823   5.23e-28   202-308   B3 DNA binding domain  
ITC1587_Bchr8_P23466   0.0000000000373   103-182   B3 DNA binding domain  
ITC1587_Bchr8_P23528   2.75e-31   175-281   B3 DNA binding domain  
ITC1587_Bchr8_P23657   5.36e-29   112-220   B3 DNA binding domain  
ITC1587_Bchr8_P24132   9.03e-43   145-284   B3 DNA binding domain  
ITC1587_Bchr9_P25294   3.27e-31   39-144   B3 DNA binding domain  
ITC1587_Bchr9_P25742   1.05e-41   97-237   B3 DNA binding domain  
ITC1587_Bchr9_P25802   1.05e-30   43-152   B3 DNA binding domain  
ITC1587_Bchr9_P26238   5.49e-43   185-324   B3 DNA binding domain  
ITC1587_Bchr9_P26617   3.66e-40   117-275   B3 DNA binding domain  
ITC1587_Bchr9_P26743   1.05e-28   69-160   B3 DNA binding domain  
ITC1587_Bchr9_P27446   8.76e-30   154-255   B3 DNA binding domain  
ITC1587_Bchr9_P27458   0.00000000000144   91-185   B3 DNA binding domain  
ITC1587_Bchr9_P27639   1.01e-30   39-133   B3 DNA binding domain  
ITC1587_Bchr9_P28219   5.76e-31   122-237   B3 DNA binding domain  
ITC1587_BchrUn_random_P35103   1.83e-27   33-130   B3 DNA binding domain  
ITC1587_BchrUn_random_P35455   1.19e-29   131-262   Type II restriction endonuclease effector domain  
ITC1587_BchrUn_random_P35520   1.57e-30   181-288   B3 DNA binding domain  
ITC1587_BchrUn_random_P36413   7.32e-35   111-215   B3 DNA binding domain  
ITC1587_BchrUn_random_P37051   2.22e-33   154-315   B3 DNA binding domain  
ITC1587_BchrUn_random_P37786   0.00000000000151   555-625   B3 DNA binding domain  
  0.00353   659-684   B3 DNA binding domain  
ITC1587_BchrUn_random_P37864   1.35e-23   106-201   B3 DNA binding domain  
 
Weak hits:
ITC1587_Bchr2_P04860   0.00432   2-91   B3 DNA binding domain  
ITC1587_Bchr6_P16026   0.00785   39-144   B3 DNA binding domain  
ITC1587_Bchr6_P16061   0.00549   75-108,142-204   B3 DNA binding domain  
ITC1587_Bchr6_P16481   0.000824   39-142   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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