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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza meridionalis 22

Assignment details

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Oryza meridionalis 22 has 193 significant domains in 117 proteins.

     

Sequence ID   Evalue   Region   Family  
OMERI01G02450.1   2.09e-29   177-289   B3 DNA binding domain  
OMERI01G02460.1   4.58e-30   179-291   B3 DNA binding domain  
OMERI01G08370.1   0.000000373   181-286   B3 DNA binding domain  
OMERI01G08660.1   4.97e-37   127-265   B3 DNA binding domain  
OMERI01G15620.1   0.000000000000569   180-267   B3 DNA binding domain  
  0.00000000255   351-440   B3 DNA binding domain  
OMERI01G15620.2   0.00000000000608   161-240   B3 DNA binding domain  
  0.00000000235   324-413   B3 DNA binding domain  
OMERI01G20920.1   0.000000451   95-164   B3 DNA binding domain  
OMERI01G22880.1   1.96e-43   144-284   B3 DNA binding domain  
OMERI01G22880.2   2.35e-43   144-284   B3 DNA binding domain  
OMERI01G23190.1   0.0000569   260-324   B3 DNA binding domain  
OMERI01G24380.1   2.88e-30   214-309   B3 DNA binding domain  
OMERI01G25530.1   1.43e-17   179-277   B3 DNA binding domain  
OMERI01G26510.1   1.43e-23   272-368   B3 DNA binding domain  
  4.51e-21   17-125   B3 DNA binding domain  
OMERI01G26530.1   2.55e-21   6-115   B3 DNA binding domain  
OMERI01G26530.2   1.82e-21   6-115   B3 DNA binding domain  
OMERI01G26530.3   1.82e-21   6-115   B3 DNA binding domain  
OMERI01G26530.4   1.14e-22   6-115   B3 DNA binding domain  
OMERI01G27630.1   2.75e-47   176-331   B3 DNA binding domain  
OMERI01G37420.1   1.84e-22   129-227   B3 DNA binding domain  
  0.0000000000000726   582-672   B3 DNA binding domain  
OMERI01G37850.1   1.05e-21   535-629   B3 DNA binding domain  
OMERI01G38270.1   0.00000000000000186   16-118   B3 DNA binding domain  
OMERI01G38290.1   1.28e-20   135-234   B3 DNA binding domain  
  0.0000000000000012   314-423   B3 DNA binding domain  
  0.000000000000628   18-118   B3 DNA binding domain  
OMERI01G39070.1   9.16e-40   121-258   B3 DNA binding domain  
OMERI01G39070.2   8.63e-40   121-258   B3 DNA binding domain  
OMERI02G01910.1   4.58e-42   121-260   B3 DNA binding domain  
OMERI02G01910.2   4.32e-42   121-260   B3 DNA binding domain  
OMERI02G01910.3   4.32e-42   88-227   B3 DNA binding domain  
OMERI02G04130.1   1.2e-41   137-277   B3 DNA binding domain  
OMERI02G04950.1   0.0000000000471   49-98   B3 DNA binding domain  
OMERI02G05750.1   3.4e-21   2-89   B3 DNA binding domain  
OMERI02G08420.1   0.00000000000000667   110-181   B3 DNA binding domain  
  0.00000000000000922   12-108   B3 DNA binding domain  
OMERI02G08420.2   0.00000000000000667   110-181   B3 DNA binding domain  
  0.00000000000000922   12-108   B3 DNA binding domain  
OMERI02G14880.1   9.02e-18   27-133   B3 DNA binding domain  
OMERI02G19450.1   4.58e-44   119-259   B3 DNA binding domain  
OMERI02G21550.1   2.35e-16   327-419   B3 DNA binding domain  
OMERI02G23420.1   8.89e-29   116-222   B3 DNA binding domain  
OMERI02G26430.1   4.71e-29   92-200   B3 DNA binding domain  
OMERI02G34810.1   2.75e-43   131-253   B3 DNA binding domain  
OMERI03G01600.1   6.8e-29   36-127   B3 DNA binding domain  
OMERI03G05970.1   5.89e-25   39-135   B3 DNA binding domain  
OMERI03G07820.1   9.61e-20   12-116   B3 DNA binding domain  
  7.85e-16   153-244   B3 DNA binding domain  
OMERI03G07820.2   1.96e-16   38-129   B3 DNA binding domain  
OMERI03G23080.1   4.51e-22   24-121   B3 DNA binding domain  
  1.18e-18   552-658   B3 DNA binding domain  
  5.3e-17   769-859   B3 DNA binding domain  
  7.06e-17   371-454   B3 DNA binding domain  
  0.0000000000000746   124-206   B3 DNA binding domain  
OMERI03G23090.1   2.09e-24   23-121   B3 DNA binding domain  
  0.00000000000235   249-321   B3 DNA binding domain  
OMERI03G23110.1   7.06e-24   284-377   B3 DNA binding domain  
  6.08e-21   604-704   B3 DNA binding domain  
  2.75e-20   66-165   B3 DNA binding domain  
  1.75e-18   807-906   B3 DNA binding domain  
  6.67e-18   1016-1115   B3 DNA binding domain  
  1.12e-16   451-545   B3 DNA binding domain  
OMERI03G23110.2   3.53e-24   284-377   B3 DNA binding domain  
  9.22e-21   66-165   B3 DNA binding domain  
  0.0000000000049   451-529   B3 DNA binding domain  
OMERI03G23140.1   8.44e-25   24-122   B3 DNA binding domain  
  1.35e-23   300-398   B3 DNA binding domain  
  3.14e-21   581-679   B3 DNA binding domain  
  3.34e-16   808-888   B3 DNA binding domain  
  0.0165   489-550   B3 DNA binding domain  
OMERI03G23150.1   2.75e-23   25-121   B3 DNA binding domain  
  1.31e-21   199-302   B3 DNA binding domain  
OMERI03G23160.1   1.53e-23   420-518   B3 DNA binding domain  
  1.26e-22   56-156   B3 DNA binding domain  
  9.22e-17   622-733   B3 DNA binding domain  
  0.0000000000549   281-348   B3 DNA binding domain  
OMERI03G23160.2   4.32e-23   56-156   B3 DNA binding domain  
  0.0000000000196   280-348   B3 DNA binding domain  
OMERI03G31460.1   1.83e-44   117-256   B3 DNA binding domain  
OMERI04G08440.1   0.0000000000000192   66-146   B3 DNA binding domain  
OMERI04G11290.1   9.81e-39   112-222   B3 DNA binding domain  
OMERI04G11290.2   1.15e-38   112-222   B3 DNA binding domain  
OMERI04G13010.1   0.000000000000017   3-51   B3 DNA binding domain  
OMERI04G15090.1   1.31e-28   121-228   B3 DNA binding domain  
OMERI04G18260.2   0.0000000235   5-65   B3 DNA binding domain  
OMERI04G18440.1   5.62e-29   82-173   B3 DNA binding domain  
OMERI04G23720.1   3.92e-45   215-354   B3 DNA binding domain  
OMERI04G24270.1   2.09e-47   168-312   B3 DNA binding domain  
  2.09e-47   968-1112   B3 DNA binding domain  
OMERI04G24270.2   2.22e-47   168-312   B3 DNA binding domain  
  2.22e-47   998-1142   B3 DNA binding domain  
OMERI04G24270.3   2.22e-47   168-312   B3 DNA binding domain  
  2.22e-47   1004-1148   B3 DNA binding domain  
OMERI04G24270.4   2.22e-47   142-286   B3 DNA binding domain  
  2.22e-47   1042-1186   B3 DNA binding domain  
OMERI04G24270.5   2.22e-47   168-312   B3 DNA binding domain  
  2.22e-47   1068-1212   B3 DNA binding domain  
OMERI04G24270.6   2.22e-47   168-312   B3 DNA binding domain  
  2.22e-47   1042-1186   B3 DNA binding domain  
OMERI04G24270.7   8.11e-48   142-286   B3 DNA binding domain  
OMERI04G24270.8   8.11e-48   142-286   B3 DNA binding domain  
OMERI04G24270.9   7.72e-48   120-264   B3 DNA binding domain  
OMERI04G24670.1   0.00000129   436-490   B3 DNA binding domain  
OMERI04G24670.2   0.000000863   296-350   B3 DNA binding domain  
OMERI04G24670.4   0.000000667   257-311   B3 DNA binding domain  
OMERI04G25500.1   1.44e-26   104-226   B3 DNA binding domain  
OMERI05G06920.1   0.000000687   152-214   B3 DNA binding domain  
OMERI05G17150.1   3.14e-19   346-447   B3 DNA binding domain  
OMERI05G17190.1   5.23e-17   482-582   B3 DNA binding domain  
  1.57e-16   100-209   B3 DNA binding domain  
OMERI05G17200.1   0.00000000000000562   481-592   B3 DNA binding domain  
  0.00000000000000693   115-228   B3 DNA binding domain  
OMERI05G19600.1   5.49e-28   56-132   B3 DNA binding domain  
OMERI05G19600.2   6.41e-28   117-193   B3 DNA binding domain  
OMERI05G21370.1   2.22e-28   169-289   B3 DNA binding domain  
OMERI06G00470.1   6.28e-26   26-129   B3 DNA binding domain  
OMERI06G00760.1   0.000000000000143   20-100   B3 DNA binding domain  
OMERI06G06990.1   3.92e-24   125-223   B3 DNA binding domain  
OMERI06G06990.2   3.92e-24   125-223   B3 DNA binding domain  
OMERI06G20210.1   1.08e-19   139-243   B3 DNA binding domain  
  0.000000000000216   315-408   B3 DNA binding domain  
  0.000000000167   12-124   B3 DNA binding domain  
OMERI06G23200.1   2.49e-48   119-263   B3 DNA binding domain  
OMERI06G23680.1   1.16e-28   124-230   B3 DNA binding domain  
OMERI06G24960.1   2.75e-43   141-281   B3 DNA binding domain  
OMERI06G24960.2   2.09e-43   141-281   B3 DNA binding domain  
OMERI06G24960.3   2.62e-43   108-248   B3 DNA binding domain  
OMERI07G08500.1   3.01e-20   76-157   B3 DNA binding domain  
OMERI07G15800.1   2.62e-19   456-558   B3 DNA binding domain  
OMERI07G15800.2   2.49e-19   456-558   B3 DNA binding domain  
OMERI07G23470.1   2.88e-21   360-463   B3 DNA binding domain  
OMERI07G23470.2   3.01e-21   360-463   B3 DNA binding domain  
OMERI08G00420.1   0.00000000719   203-244   B3 DNA binding domain  
  0.0000000144   104-138   B3 DNA binding domain  
OMERI08G03480.1   8.37e-28   68-162   B3 DNA binding domain  
OMERI08G07840.1   0.00000353   341-386   B3 DNA binding domain  
OMERI10G10000.1   3.4e-29   120-231   B3 DNA binding domain  
OMERI10G13500.1   3.79e-29   32-132   B3 DNA binding domain  
OMERI11G03200.1   1.96e-28   35-129   B3 DNA binding domain  
OMERI11G04630.1   1.7e-25   289-389   B3 DNA binding domain  
  2.75e-22   31-127   B3 DNA binding domain  
OMERI11G04630.2   1.44e-25   266-366   B3 DNA binding domain  
  3.01e-20   22-104   B3 DNA binding domain  
OMERI11G12320.1   4.02e-41   151-285   B3 DNA binding domain  
OMERI11G15210.1   0.00000000863   99-154   B3 DNA binding domain  
OMERI12G00090.2   0.00000314   3-52   B3 DNA binding domain  
OMERI12G01720.1   1.83e-30   82-177   B3 DNA binding domain  
OMERI12G01720.2   1.83e-30   82-177   B3 DNA binding domain  
OMERI12G05660.1   0.000000011   332-401   B3 DNA binding domain  
OMERI12G08370.1   5.79e-36   139-294   B3 DNA binding domain  
OMERI12G12100.1   1.51e-21   746-844   B3 DNA binding domain  
  4.51e-21   46-145   B3 DNA binding domain  
  1.43e-20   249-348   B3 DNA binding domain  
  8.63e-20   1447-1547   B3 DNA binding domain  
  5.1e-19   607-715   B3 DNA binding domain  
  9.02e-18   1106-1212   B3 DNA binding domain  
  4.9e-17   1227-1330   B3 DNA binding domain  
  1.39e-16   955-1054   B3 DNA binding domain  
  0.0000000000000122   457-560   B3 DNA binding domain  
OMERI12G12100.2   1.49e-21   716-814   B3 DNA binding domain  
  4.32e-21   46-145   B3 DNA binding domain  
  1.39e-20   249-348   B3 DNA binding domain  
  8.44e-20   1417-1517   B3 DNA binding domain  
  8.83e-18   1076-1182   B3 DNA binding domain  
  4.71e-17   1197-1300   B3 DNA binding domain  
  1.35e-16   925-1024   B3 DNA binding domain  
  0.0000000000000012   583-685   B3 DNA binding domain  
  0.0000000000000118   457-560   B3 DNA binding domain  
OMERI12G12100.3   1.45e-21   688-786   B3 DNA binding domain  
  4.12e-21   46-145   B3 DNA binding domain  
  1.35e-20   191-290   B3 DNA binding domain  
  8.24e-20   1389-1489   B3 DNA binding domain  
  4.9e-19   549-657   B3 DNA binding domain  
  8.63e-18   1048-1154   B3 DNA binding domain  
  4.71e-17   1169-1272   B3 DNA binding domain  
  1.31e-16   897-996   B3 DNA binding domain  
  0.0000000000000116   399-502   B3 DNA binding domain  
OMERI12G12100.4   1.41e-21   658-756   B3 DNA binding domain  
  4.12e-21   46-145   B3 DNA binding domain  
  1.33e-20   191-290   B3 DNA binding domain  
  8.04e-20   1359-1459   B3 DNA binding domain  
  8.44e-18   1018-1124   B3 DNA binding domain  
  4.51e-17   1139-1242   B3 DNA binding domain  
  1.29e-16   867-966   B3 DNA binding domain  
  0.00000000000000116   525-627   B3 DNA binding domain  
  0.0000000000000112   399-502   B3 DNA binding domain  
OMERI12G12130.1   2.75e-18   32-133   B3 DNA binding domain  
  1.31e-17   246-348   B3 DNA binding domain  
OMERI12G12140.1   1e-18   245-348   B3 DNA binding domain  
  1.86e-17   21-124   B3 DNA binding domain  
OMERI12G14010.1   7.06e-49   117-261   B3 DNA binding domain  
OMERI12G14010.2   7.06e-49   117-261   B3 DNA binding domain  
 
Weak hits:
OMERI02G05840.1   0.0263   136-167   B3 DNA binding domain  
OMERI04G24670.3   0.0902   269-294   B3 DNA binding domain  
OMERI08G07900.1   0.00745   231-294   B3 DNA binding domain  
OMERI12G04460.1   0.00706   271-324   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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