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DNA-binding pseudobarrel domain superfamily domain assignments
in
Zea mays subsp. mays

Assignment details

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Zea mays subsp. mays has 157 significant domains in 141 proteins.

     

Sequence ID   Evalue   Region   Family  
AC193767.3_FGP003   2.09e-20   113-218   B3 DNA binding domain  
AC200117.3_FGP004   0.000000000628   178-250   B3 DNA binding domain  
AC205703.4_FGP008   0.000000000104   2-80   B3 DNA binding domain  
  0.000000000255   651-712   B3 DNA binding domain  
AC207656.3_FGP002   7.06e-29   109-216   B3 DNA binding domain  
AC207755.3_FGP006   1.16e-27   38-134   B3 DNA binding domain  
GRMZM2G001048_P01   2.55e-22   388-488   B3 DNA binding domain  
  2.94e-16   98-195   B3 DNA binding domain  
GRMZM2G001048_P02   2.16e-16   98-195   B3 DNA binding domain  
GRMZM2G005284_P01   5.23e-23   137-240   B3 DNA binding domain  
GRMZM2G006042_P01   4.02e-41   144-276   B3 DNA binding domain  
GRMZM2G006042_P02   4.02e-41   144-276   B3 DNA binding domain  
GRMZM2G006042_P03   4.12e-41   144-276   B3 DNA binding domain  
GRMZM2G008356_P01   1.44e-19   453-555   B3 DNA binding domain  
GRMZM2G017187_P02   3.14e-44   114-258   B3 DNA binding domain  
GRMZM2G017187_P03   3.53e-44   114-258   B3 DNA binding domain  
GRMZM2G017187_P04   6.41e-45   114-258   B3 DNA binding domain  
GRMZM2G018336_P01   6.54e-30   51-149   B3 DNA binding domain  
GRMZM2G018485_P01   1.44e-28   84-175   B3 DNA binding domain  
GRMZM2G019956_P01   5.23e-18   241-345   B3 DNA binding domain  
  0.00000000000000111   49-145   B3 DNA binding domain  
GRMZM2G023813_P01   5.23e-21   112-217   B3 DNA binding domain  
GRMZM2G024948_P01   2.75e-29   98-207   B3 DNA binding domain  
GRMZM2G027253_P01   3.66e-28   24-132   B3 DNA binding domain  
GRMZM2G028794_P01   4.9e-22   132-229   B3 DNA binding domain  
GRMZM2G028980_P01   1.31e-48   119-263   B3 DNA binding domain  
GRMZM2G030710_P01   3.01e-43   158-278   B3 DNA binding domain  
GRMZM2G034840_P01   3.79e-42   134-272   B3 DNA binding domain  
GRMZM2G034840_P02   1.57e-44   134-273   B3 DNA binding domain  
GRMZM2G035405_P01   7.59e-49   119-263   B3 DNA binding domain  
GRMZM2G035405_P02   3.27e-48   119-263   B3 DNA binding domain  
GRMZM2G051795_P01   0.0000000000216   190-300   B3 DNA binding domain  
GRMZM2G056120_P01   2.09e-44   112-266   B3 DNA binding domain  
GRMZM2G059939_P01   0.0000000235   204-238   B3 DNA binding domain  
GRMZM2G059939_P02   4.71e-29   204-317   B3 DNA binding domain  
GRMZM2G065478_P01   0.00000000000000412   10-101   B3 DNA binding domain  
GRMZM2G065496_P01   1.96e-20   22-122   B3 DNA binding domain  
GRMZM2G065496_P02   4.51e-20   31-131   B3 DNA binding domain  
  0.00000000000000124   252-356   B3 DNA binding domain  
GRMZM2G065496_P03   2.16e-20   31-131   B3 DNA binding domain  
GRMZM2G065496_P05   1.96e-20   22-122   B3 DNA binding domain  
GRMZM2G065538_P01   6.54e-30   51-149   B3 DNA binding domain  
GRMZM2G073750_P01   4.32e-47   117-258   B3 DNA binding domain  
GRMZM2G073750_P02   4.32e-47   117-258   B3 DNA binding domain  
GRMZM2G073750_P03   3.53e-47   117-258   B3 DNA binding domain  
GRMZM2G078274_P01   2.49e-48   118-262   B3 DNA binding domain  
GRMZM2G078274_P03   2.35e-48   118-262   B3 DNA binding domain  
GRMZM2G081158_P01   2.09e-47   117-258   B3 DNA binding domain  
GRMZM2G081406_P01   4.05e-29   119-227   B3 DNA binding domain  
GRMZM2G082227_P01   1.18e-28   35-140   B3 DNA binding domain  
GRMZM2G084173_P01   0.00000000255   64-156   B3 DNA binding domain  
GRMZM2G085248_P01   1.06e-44   114-265   B3 DNA binding domain  
GRMZM2G086949_P01   8.63e-45   142-281   B3 DNA binding domain  
GRMZM2G088413_P01   2.35e-22   24-124   B3 DNA binding domain  
  9.42e-17   226-331   B3 DNA binding domain  
GRMZM2G088427_P01   2.75e-22   22-120   B3 DNA binding domain  
  1.75e-17   229-330   B3 DNA binding domain  
GRMZM2G098063_P01   3.73e-20   24-125   B3 DNA binding domain  
  9.22e-19   219-322   B3 DNA binding domain  
GRMZM2G098443_P01   1.03e-28   37-127   B3 DNA binding domain  
GRMZM2G102059_P01   3.66e-29   91-185   B3 DNA binding domain  
GRMZM2G102845_P01   8.76e-40   137-277   B3 DNA binding domain  
GRMZM2G102938_P01   0.0000000000122   76-140   B3 DNA binding domain  
GRMZM2G102938_P02   9.02e-18   31-114   B3 DNA binding domain  
GRMZM2G102938_P03   0.0000000000122   76-140   B3 DNA binding domain  
GRMZM2G102938_P04   9.02e-18   31-114   B3 DNA binding domain  
GRMZM2G102938_P05   9.02e-18   31-114   B3 DNA binding domain  
GRMZM2G106673_P01   3.34e-23   66-164   B3 DNA binding domain  
GRMZM2G106673_P02   9.02e-23   146-244   B3 DNA binding domain  
GRMZM2G106673_P03   1.37e-20   66-156   B3 DNA binding domain  
GRMZM2G106673_P04   3.34e-23   66-164   B3 DNA binding domain  
GRMZM2G106673_P05   1.96e-23   39-137   B3 DNA binding domain  
GRMZM2G106673_P06   7.46e-23   127-225   B3 DNA binding domain  
GRMZM2G109879_P01   1.16e-16   140-238   B3 DNA binding domain  
  6.08e-16   300-394   B3 DNA binding domain  
  0.00000000000000194   455-550   B3 DNA binding domain  
  0.0000000000000608   18-114   B3 DNA binding domain  
GRMZM2G109879_P02   1.28e-16   140-238   B3 DNA binding domain  
  6.67e-16   300-394   B3 DNA binding domain  
  0.0000000000000667   18-114   B3 DNA binding domain  
GRMZM2G111123_P01   8.24e-22   148-245   B3 DNA binding domain  
GRMZM2G111123_P02   8.24e-22   148-245   B3 DNA binding domain  
GRMZM2G116557_P01   1.57e-39   209-344   B3 DNA binding domain  
GRMZM2G116557_P02   1.57e-39   209-344   B3 DNA binding domain  
GRMZM2G116557_P03   1.44e-39   209-344   B3 DNA binding domain  
GRMZM2G123461_P01   9.42e-18   18-120   B3 DNA binding domain  
  0.0000000000412   199-268   B3 DNA binding domain  
GRMZM2G125095_P01   2.22e-30   27-140   B3 DNA binding domain  
GRMZM2G126194_P01   5.49e-18   40-137   B3 DNA binding domain  
GRMZM2G126194_P02   0.0000000000000961   19-82   B3 DNA binding domain  
GRMZM2G128960_P01   2.16e-20   24-120   B3 DNA binding domain  
GRMZM2G133398_P01   1.44e-19   516-611   B3 DNA binding domain  
GRMZM2G133398_P02   3.01e-22   516-612   B3 DNA binding domain  
GRMZM2G137413_P01   6.8e-43   113-251   B3 DNA binding domain  
GRMZM2G142999_P01   2.09e-30   29-147   B3 DNA binding domain  
GRMZM2G149940_P01   2.35e-17   302-400   B3 DNA binding domain  
GRMZM2G153233_P01   2.09e-29   111-220   B3 DNA binding domain  
GRMZM2G153233_P02   6.41e-29   111-220   B3 DNA binding domain  
GRMZM2G158162_P01   3.01e-21   367-470   B3 DNA binding domain  
GRMZM2G158162_P02   3.01e-21   367-470   B3 DNA binding domain  
GRMZM2G158162_P03   3.01e-21   367-470   B3 DNA binding domain  
GRMZM2G159399_P01   1.12e-28   113-222   B3 DNA binding domain  
GRMZM2G159399_P02   3.01e-28   113-222   B3 DNA binding domain  
GRMZM2G159592_P01   1.16e-28   204-306   B3 DNA binding domain  
GRMZM2G160005_P01   2.75e-44   117-256   B3 DNA binding domain  
GRMZM2G160224_P01   0.00000000000628   2-47   B3 DNA binding domain  
GRMZM2G169654_P01   1.57e-31   211-314   B3 DNA binding domain  
GRMZM2G169820_P01   1.7e-40   120-260   B3 DNA binding domain  
GRMZM2G172621_P01   3.01e-21   361-464   B3 DNA binding domain  
GRMZM2G174610_P01   7.65e-24   135-231   B3 DNA binding domain  
GRMZM2G174610_P02   3.73e-19   1-86   B3 DNA binding domain  
GRMZM2G177244_P01   6.47e-20   91-184   B3 DNA binding domain  
  0.00000000000235   609-682   B3 DNA binding domain  
GRMZM2G179121_P01   2.49e-16   119-230   B3 DNA binding domain  
GRMZM2G180168_P01   1.7e-28   58-156   B3 DNA binding domain  
GRMZM2G181254_P01   4.84e-18   158-265   B3 DNA binding domain  
GRMZM2G303168_P01   0.00000000432   207-315   B3 DNA binding domain  
GRMZM2G317900_P01   7.32e-43   129-269   B3 DNA binding domain  
GRMZM2G320754_P01   1.47e-20   27-127   B3 DNA binding domain  
GRMZM2G328742_P01   6.41e-26   40-144   B3 DNA binding domain  
GRMZM2G338259_P01   1.31e-39   123-257   B3 DNA binding domain  
GRMZM2G338259_P02   1.31e-39   123-257   B3 DNA binding domain  
GRMZM2G344521_P01   1.86e-18   406-510   B3 DNA binding domain  
  3.34e-16   209-314   B3 DNA binding domain  
GRMZM2G344521_P02   3.73e-18   691-795   B3 DNA binding domain  
  6.47e-16   494-599   B3 DNA binding domain  
GRMZM2G352159_P01   3.4e-35   131-238   B3 DNA binding domain  
GRMZM2G352159_P02   3.92e-41   131-266   B3 DNA binding domain  
GRMZM2G352159_P03   4.32e-41   51-186   B3 DNA binding domain  
GRMZM2G352159_P04   4.45e-35   133-240   B3 DNA binding domain  
GRMZM2G352159_P05   4.45e-35   131-238   B3 DNA binding domain  
GRMZM2G352159_P06   4.45e-35   131-238   B3 DNA binding domain  
GRMZM2G352159_P07   3.4e-35   131-238   B3 DNA binding domain  
GRMZM2G361376_P01   3.66e-19   111-226   B3 DNA binding domain  
GRMZM2G369356_P01   9.03e-28   111-218   B3 DNA binding domain  
GRMZM2G378580_P01   1.67e-40   143-278   B3 DNA binding domain  
GRMZM2G378580_P02   1.67e-40   142-277   B3 DNA binding domain  
GRMZM2G378580_P05   1.57e-40   175-310   B3 DNA binding domain  
GRMZM2G378580_P06   1.37e-40   142-277   B3 DNA binding domain  
GRMZM2G378580_P07   0.0000000000194   142-178   B3 DNA binding domain  
GRMZM2G390641_P01   2.88e-29   116-223   B3 DNA binding domain  
GRMZM2G390641_P02   2.75e-29   116-223   B3 DNA binding domain  
GRMZM2G405170_P01   1.14e-26   24-132   B3 DNA binding domain  
GRMZM2G405699_P01   0.00000000000051   233-316   B3 DNA binding domain  
GRMZM2G405699_P02   0.00000000000051   230-313   B3 DNA binding domain  
GRMZM2G405699_P03   0.000000000000145   97-180   B3 DNA binding domain  
GRMZM2G423393_P01   6.54e-26   77-184   B3 DNA binding domain  
GRMZM2G437460_P01   8.24e-42   141-249   B3 DNA binding domain  
GRMZM2G437460_P02   9.29e-42   141-248   B3 DNA binding domain  
GRMZM2G441325_P01   6.15e-43   123-243   B3 DNA binding domain  
GRMZM2G464422_P01   0.000000018   141-241   B3 DNA binding domain  
GRMZM2G475263_P01   2.75e-37   108-248   B3 DNA binding domain  
GRMZM2G475263_P02   4.45e-33   101-207   B3 DNA binding domain  
GRMZM2G475882_P01   4.58e-48   29-173   B3 DNA binding domain  
GRMZM2G475882_P02   4.58e-30   113-259   B3 DNA binding domain  
GRMZM2G475882_P03   4.58e-30   113-259   B3 DNA binding domain  
GRMZM2G702026_P01   1.96e-43   113-251   B3 DNA binding domain  
 
Weak hits:
AC204821.3_FGP004   0.0569   20-58   B3 DNA binding domain  
GRMZM2G089640_P01   0.0824   5-48   Type II restriction endonuclease effector domain  
GRMZM2G174610_P03   0.0133   136-158   B3 DNA binding domain  
GRMZM2G338853_P01   0.0471   114-164   B3 DNA binding domain  
GRMZM2G355906_P03   0.000184   125-172   B3 DNA binding domain  
GRMZM2G371056_P01   0.0392   192-255   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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