SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Plexin repeat superfamily domain assignments
in
Pan troglodytes 76_2.1.4

Assignment details

(show help)


Pan troglodytes 76_2.1.4 has 34 significant domains in 33 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000002167   0.00000157   518-544   Plexin repeat  
ENSPTRP00000003263   0.00000000000654   510-561   Plexin repeat  
  0.0000445   806-840   Plexin repeat  
ENSPTRP00000004110   0.000000000000277   24-83   Plexin repeat  
ENSPTRP00000008519   0.0000000000194   43-99   Plexin repeat  
ENSPTRP00000009008   0.0000000000641   454-502   Plexin repeat  
ENSPTRP00000012449   0.00000000209   491-525   Plexin repeat  
ENSPTRP00000012734   0.000000000000167   473-526   Plexin repeat  
ENSPTRP00000016404   0.00000000424   27-78   Plexin repeat  
ENSPTRP00000017536   0.0000000112   461-504   Plexin repeat  
ENSPTRP00000020987   0.00000000000144   414-462   Plexin repeat  
ENSPTRP00000021483   0.0000000000000246   21-78   Plexin repeat  
ENSPTRP00000025675   0.00000000000222   482-533   Plexin repeat  
  0.0157   638-670   Plexin repeat  
  0.0262   1026-1067   Plexin repeat  
ENSPTRP00000025788   0.00000000000188   522-569   Plexin repeat  
ENSPTRP00000025798   0.000000000314   544-595   Plexin repeat  
ENSPTRP00000025902   0.00000000012   521-573   Plexin repeat  
ENSPTRP00000026378   0.00000000000767   553-602   Plexin repeat  
ENSPTRP00000026442   0.000000000144   516-568   Plexin repeat  
ENSPTRP00000026498   0.0000000000772   170-222   Plexin repeat  
ENSPTRP00000028691   0.00000000000148   486-538   Plexin repeat  
ENSPTRP00000029361   0.00000000119   514-562   Plexin repeat  
ENSPTRP00000032396   0.00000000000157   44-102   Plexin repeat  
ENSPTRP00000033095   0.0000000000262   513-564   Plexin repeat  
ENSPTRP00000033104   0.00000000000227   518-572   Plexin repeat  
ENSPTRP00000033105   0.0000000000732   516-567   Plexin repeat  
ENSPTRP00000033108   0.000000000209   533-585   Plexin repeat  
ENSPTRP00000043012   0.00000000011   512-561   Plexin repeat  
ENSPTRP00000043367   0.0000000000384   496-547   Plexin repeat  
ENSPTRP00000045144   0.00000000155   514-563   Plexin repeat  
ENSPTRP00000049238   0.000000000000759   502-552   Plexin repeat  
ENSPTRP00000051108   0.00000000000251   26-78   Plexin repeat  
ENSPTRP00000055015   0.000000000000502   22-81   Plexin repeat  
ENSPTRP00000057112   0.00000000000136   517-563   Plexin repeat  
ENSPTRP00000059933   0.000000000000157   510-562   Plexin repeat  
  0.000115   809-841   Plexin repeat  
  0.0379   654-686   Plexin repeat  
 
Weak hits:
ENSPTRP00000003972   0.00082   326-372   Plexin repeat  
ENSPTRP00000008252   0.051   434-467   Plexin repeat  
ENSPTRP00000015476   0.000837   302-340   Plexin repeat  
ENSPTRP00000038678   0.000196   538-572   Plexin repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Plexin repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   45094 45094
No Yes Homo sapiens 76_38 Human 143 139
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 34 33
No Yes Gorilla gorilla 76_3.1 Western gorilla 58 54
No Yes Pongo abelii 76_2 Sumatran orangutan 43 40
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 42 40
No Yes Papio anubis 76 Olive baboon 47 45
No Yes Macaca mulatta 76_1 Rhesus monkey 66 63
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 90 87
No Yes Otolemur garnettii 76_3 Small-eared galago 39 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 32 30
No Yes Rattus norvegicus 76_5.0 Norway rat 44 42
No Yes Mus musculus 76_38 House mouse 96 93
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 36 34
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 44 41
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 40 36
No Yes Cavia porcellus 76_3 Domestic guinea pig 42 40
No Yes Oryctolagus cuniculus 76_2 Rabbit 42 39
No Yes Ochotona princeps 76 American pika 29 27
No Yes Tupaia belangeri 76 Northern tree shrew 22 22
No Yes Sus scrofa 76_10.2 Pig 41 40
No Yes Bos taurus 76_3.1 Cattle 39 37
No Yes Ovis aries 76_3.1 Sheep 42 41
No Yes Vicugna pacos 76_1 Alpaca 14 14
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 37 35
No Yes Mustela putorius furo 76_1.0 Domestic ferret 41 38
No Yes Ailuropoda melanoleuca 76_1 Giant panda 49 46
No Yes Canis familiaris 76_3.1 Dog 51 47
No Yes Felis catus 76_6.2 Domestic cat 40 38
No Yes Equus caballus 76_2 Horse 54 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 41 38
No Yes Pteropus vampyrus 76_1 Large flying fox 39 38
No Yes Sorex araneus 76_1 European shrew 23 23
No Yes Erinaceus europaeus 76 Western European hedgehog 22 21
No Yes Procavia capensis 76_1 Cape rock hyrax 34 33
No Yes Loxodonta africana 76_3 African savanna elephant 60 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 26 26
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 45 42
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 16 16
No Yes Macropus eugenii 76_1.0 Tammar wallaby 32 31
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 49 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 38 37
No Yes Ornithorhynchus anatinus 76_5 Platypus 30 30
No Yes Saccoglossus kowalevskii v3.0   12 12
No Yes Petromyzon marinus 76_7.0 Sea lamprey 17 17
No Yes Meleagris gallopavo 76_2 Turkey 36 34
No Yes Gallus gallus 76_4 Chicken 39 36
No Yes Anas platyrhynchos 76_1.0 Mallard 30 28
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 33 31
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 36 34
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 46 43
No Yes Anolis carolinensis 76_2.0 Green anole 40 37
No Yes Xenopus laevis African clawed frog 52 48
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 45 41
No Yes Latimeria chalumnae 76_1 Coelacanth 41 40
No Yes Lepisosteus oculatus 76 Spotted gar 59 56
No Yes Gadus morhua 76_1 Atlantic cod 56 53
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 77 73
No Yes Takifugu rubripes 76_4 Torafugu 308 286
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 75 70
No Yes Oryzias latipes 76_1 Japanese medaka 82 73
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 64 60
No Yes Poecilia formosa 76 Amazon molly 69 65
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 94 87
No Yes Astyanax mexicanus 76 Mexican tetra 60 56
No Yes Danio rerio 76_9 Zebrafish 103 100
No Yes Oikopleura dioica   6 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 76 Vase tunicate 6 6
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 34 32
No Yes Adineta vaga   6 6
No Yes Octopus bimaculoides 280   13 12
No Yes Crassostrea gigas 22 Pacific oyster 16 15
No Yes Lottia gigantea Owl limpet 12 10
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   8 7
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 9
No Yes Heliconius melpomene Postman butterfly 8 7
No Yes Bombyx mori Domestic silkworm 6 5
No Yes Nasonia vitripennis Jewel wasp 10 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 21
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 9
No Yes Linepithema humile v1.1 Argentine ant 9 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 9 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 9 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 7
No Yes Atta cephalotes v1.1   8 7
No Yes Camponotus floridanus v3.3 Florida carpenter ant 8 7
No Yes Lucilia cuprina Australian sheep blowfly 7 6
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   9 8
No Yes Drosophila pseudoobscura 2.13   10 8
No Yes Drosophila persimilis 1.3   10 8
No Yes Drosophila suzukii   9 8
No Yes Drosophila yakuba 1.3   8 8
No Yes Drosophila simulans 1.3   6 6
No Yes Drosophila sechellia 1.3   9 8
No Yes Drosophila melanogaster 76_5 Fruit fly 27 25
No Yes Drosophila erecta 1.3   8 8
No Yes Drosophila ananassae 1.3   8 7
No Yes Drosophila virilis 1.2   8 8
No Yes Drosophila mojavensis 1.3   9 8
No Yes Megaselia scalaris 22   5 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 10 9
No Yes Culex pipiens quinquefasciatus Southern house mosquito 8 8
No Yes Anopheles darlingi 22 American malaria mosquito 5 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 9 8
No Yes Tribolium castaneum 3.0 Red flour beetle 8 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 8 8
No Yes Acyrthosiphon pisum Pea aphid 8 8
No Yes Rhodnius prolixus 22   6 5
No Yes Daphnia pulex Common water flea 9 8
No Yes Strigamia maritima 22   9 8
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 7 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 6
No Yes Pristionchus pacificus   4 3
No Yes Meloidogyne incognita Southern root-knot nematode 3 3
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 5 5
No Yes Caenorhabditis japonica   6 6
No Yes Caenorhabditis brenneri   9 8
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 11 11
No Yes Caenorhabditis briggsae 2   6 6
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   3 3
No Yes Mnemiopsis leidyi Sea walnut 9 9
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   9 9
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 8
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   20 20
No Yes Trichoplax adhaerens   6 6
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   3 3
No Yes Cyanophora paradoxa   1 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 53 48
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 20
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 5 5
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6
No Yes Homo sapiens 75_37 (old version GRC) Human 164 159
No Yes Homo sapiens (NCBI version) Human 67 64
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 42 40
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 7 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 7 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Homo sapiens 69_37 Human 43 40
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 34 33
No Yes Gorilla gorilla 69_3.1 Western gorilla 40 38
No Yes Pongo abelii 69_2 Sumatran orangutan 41 38
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 39 37
No Yes Macaca mulatta 69_1 Rhesus monkey 40 37
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 43 42
No Yes Otolemur garnettii 69_3 Small-eared galago 39 37
No Yes Microcebus murinus 69_1 Gray mouse lemur 32 30
No Yes Rattus norvegicus 69_3.4 Norway rat 41 39
No Yes Mus musculus 69_38 House mouse 42 40
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 36 34
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 39
No Yes Cavia porcellus 69_3 Domestic guinea pig 41 39
No Yes Oryctolagus cuniculus 69_2 Rabbit 38 36
No Yes Ochotona princeps 69 American pika 29 27
No Yes Tupaia belangeri 69 Northern tree shrew 22 22
No Yes Sus scrofa 69_10.2 Pig 28 27
No Yes Bos taurus 69_3.1 Cattle 38 36
No Yes Vicugna pacos 69_1 Alpaca 14 14
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 37 35
No Yes Mustela putorius furo 69_1.0 Domestic ferret 41 38
No Yes Ailuropoda melanoleuca 69_1 Giant panda 40 38
No Yes Canis familiaris 69_3.1 Dog 42 39
No Yes Felis catus 69 Domestic cat 29 28
No Yes Equus caballus 69_2 Horse 40 37
No Yes Myotis lucifugus 69_2.0 Little brown bat 41 38
No Yes Pteropus vampyrus 69_1 Large flying fox 39 38
No Yes Sorex araneus 69_1 European shrew 23 23
No Yes Erinaceus europaeus 69 Western European hedgehog 22 21
No Yes Procavia capensis 69_1 Cape rock hyrax 34 33
No Yes Loxodonta africana 69_3 African savanna elephant 40 37
No Yes Echinops telfairi 69 Small Madagascar hedgehog 26 26
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 20 19
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 16 16
No Yes Macropus eugenii 69_1.0 Tammar wallaby 32 31
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 37 35
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 37 36
No Yes Ornithorhynchus anatinus 69_5 Platypus 28 28
No Yes Petromyzon marinus 69_7.0 Sea lamprey 16 16
No Yes Meleagris gallopavo 69_2 Turkey 33 31
No Yes Gallus gallus 69_2 Chicken 33 31
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 33 31
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 33 31
No Yes Anolis carolinensis 69_2.0 Green anole 39 37
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 37 34
No Yes Latimeria chalumnae 69_1 Coelacanth 34 33
No Yes Gadus morhua 69_1 Atlantic cod 52 49
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 56 54
No Yes Takifugu rubripes 69_4 Torafugu 63 59
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 61 56
No Yes Oryzias latipes 69_1 Japanese medaka 62 56
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 64 60
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 67 62
No Yes Danio rerio 69_9 Zebrafish 65 63
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 6 6
No Yes Drosophila melanogaster 69_5 Fruit fly 9 8
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes NCBI 2017_08 genome   22733 21607
No Yes STRING v9.0.5 (STRING)   1251 1175
No Yes Uniprot 2018_03 genome   11027 10407
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   192 179
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   197 197
No Yes TargetDB (Targets)   64 62
No Yes UniProt viral sequences (Viral)   8 8

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]