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Somatomedin B domain superfamily domain assignments
in
Gorilla gorilla 76_3.1

Assignment details

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Gorilla gorilla 76_3.1 has 14 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000000971   0.0000000131   51-99   Somatomedin B domain  
  0.0000000915   101-141   Somatomedin B domain  
ENSGGOP00000001872   0.0000000458   28-70   Somatomedin B domain  
ENSGGOP00000002831   0.0000000562   57-103   Somatomedin B domain  
  0.000000301   105-145   Somatomedin B domain  
ENSGGOP00000010821   0.0000000000196   21-67   Somatomedin B domain  
ENSGGOP00000015032   0.000000353   35-76   Somatomedin B domain  
ENSGGOP00000016024   0.000000000301   47-87   Somatomedin B domain  
ENSGGOP00000017286   0.0000000523   57-103   Somatomedin B domain  
  0.000000275   105-145   Somatomedin B domain  
ENSGGOP00000017418   0.00000000157   69-108   Somatomedin B domain  
  0.0000000131   27-67   Somatomedin B domain  
ENSGGOP00000027670   0.0000000000196   21-63   Somatomedin B domain  
  0.000000000353   88-128   Somatomedin B domain  
 
Weak hits:
ENSGGOP00000002331   0.000432   75-109   Somatomedin B domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   13507 13507
No Yes Homo sapiens 76_38 Human 36 23
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 10 6
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 9
No Yes Pongo abelii 76_2 Sumatran orangutan 14 9
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 14 9
No Yes Papio anubis 76 Olive baboon 16 10
No Yes Macaca mulatta 76_1 Rhesus monkey 18 11
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 23 14
No Yes Otolemur garnettii 76_3 Small-eared galago 16 10
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 7
No Yes Rattus norvegicus 76_5.0 Norway rat 11 7
No Yes Mus musculus 76_38 House mouse 35 21
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 12 8
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 11 7
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 7
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 8
No Yes Ochotona princeps 76 American pika 11 7
No Yes Tupaia belangeri 76 Northern tree shrew 7 6
No Yes Sus scrofa 76_10.2 Pig 15 11
No Yes Bos taurus 76_3.1 Cattle 15 9
No Yes Ovis aries 76_3.1 Sheep 16 9
No Yes Vicugna pacos 76_1 Alpaca 6 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 11 7
No Yes Mustela putorius furo 76_1.0 Domestic ferret 13 8
No Yes Ailuropoda melanoleuca 76_1 Giant panda 17 10
No Yes Canis familiaris 76_3.1 Dog 15 9
No Yes Felis catus 76_6.2 Domestic cat 15 9
No Yes Equus caballus 76_2 Horse 22 12
No Yes Myotis lucifugus 76_2.0 Little brown bat 10 6
No Yes Pteropus vampyrus 76_1 Large flying fox 10 7
No Yes Sorex araneus 76_1 European shrew 6 4
No Yes Erinaceus europaeus 76 Western European hedgehog 8 6
No Yes Procavia capensis 76_1 Cape rock hyrax 6 5
No Yes Loxodonta africana 76_3 African savanna elephant 17 10
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 9
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 8 6
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 12 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 12 8
No Yes Ornithorhynchus anatinus 76_5 Platypus 6 4
No Yes Saccoglossus kowalevskii v3.0   24 12
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 2
No Yes Meleagris gallopavo 76_2 Turkey 11 7
No Yes Gallus gallus 76_4 Chicken 16 10
No Yes Anas platyrhynchos 76_1.0 Mallard 13 9
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 10 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 9 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 13 8
No Yes Anolis carolinensis 76_2.0 Green anole 12 8
No Yes Xenopus laevis African clawed frog 20 12
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 20 12
No Yes Latimeria chalumnae 76_1 Coelacanth 16 12
No Yes Lepisosteus oculatus 76 Spotted gar 13 9
No Yes Gadus morhua 76_1 Atlantic cod 15 9
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 16 11
No Yes Takifugu rubripes 76_4 Torafugu 41 26
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 24 14
No Yes Oryzias latipes 76_1 Japanese medaka 22 14
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 8 6
No Yes Poecilia formosa 76 Amazon molly 14 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 20 13
No Yes Astyanax mexicanus 76 Mexican tetra 18 13
No Yes Danio rerio 76_9 Zebrafish 37 22
No Yes Oikopleura dioica   9 9
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 11 7
No Yes Ciona intestinalis 76 Vase tunicate 7 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 28 21
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 4 3
No Yes Lottia gigantea Owl limpet 17 16
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   5 5
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   4 4
No Yes Drosophila simulans 1.3   4 4
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 6 6
No Yes Drosophila erecta 1.3   4 4
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 4
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Daphnia pulex Common water flea 11 6
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 8 8
No Yes Amphimedon queenslandica   5 5
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   5 2
No Yes Monosiga brevicollis   9 4
No Yes Catenaria anguillulae PL171 v1.0   9 9
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Symbiodinium minutum clade B1 v1.2   27 17
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Haliangium ochraceum DSM 14365   9 6
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 26 16
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 6 6
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 45 29
No Yes Homo sapiens (NCBI version) Human 23 15
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 12 8
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 14 9
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 10 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 7
No Yes Pongo abelii 69_2 Sumatran orangutan 12 8
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 13 8
No Yes Macaca mulatta 69_1 Rhesus monkey 11 7
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 13 8
No Yes Otolemur garnettii 69_3 Small-eared galago 14 9
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 7
No Yes Rattus norvegicus 69_3.4 Norway rat 14 9
No Yes Mus musculus 69_38 House mouse 12 8
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 7
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 10 7
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 7
No Yes Oryctolagus cuniculus 69_2 Rabbit 12 8
No Yes Ochotona princeps 69 American pika 11 7
No Yes Tupaia belangeri 69 Northern tree shrew 7 6
No Yes Sus scrofa 69_10.2 Pig 12 8
No Yes Bos taurus 69_3.1 Cattle 13 8
No Yes Vicugna pacos 69_1 Alpaca 6 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 11 7
No Yes Mustela putorius furo 69_1.0 Domestic ferret 13 8
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 8
No Yes Canis familiaris 69_3.1 Dog 13 8
No Yes Felis catus 69 Domestic cat 7 5
No Yes Equus caballus 69_2 Horse 12 7
No Yes Myotis lucifugus 69_2.0 Little brown bat 10 6
No Yes Pteropus vampyrus 69_1 Large flying fox 10 7
No Yes Sorex araneus 69_1 European shrew 6 4
No Yes Erinaceus europaeus 69 Western European hedgehog 8 6
No Yes Procavia capensis 69_1 Cape rock hyrax 6 5
No Yes Loxodonta africana 69_3 African savanna elephant 13 8
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 7 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 8 6
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 8
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 8
No Yes Ornithorhynchus anatinus 69_5 Platypus 6 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 2
No Yes Meleagris gallopavo 69_2 Turkey 11 7
No Yes Gallus gallus 69_2 Chicken 10 7
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 10 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 9 6
No Yes Anolis carolinensis 69_2.0 Green anole 10 7
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 15 9
No Yes Latimeria chalumnae 69_1 Coelacanth 13 9
No Yes Gadus morhua 69_1 Atlantic cod 15 9
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 13 9
No Yes Takifugu rubripes 69_4 Torafugu 14 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 10
No Yes Oryzias latipes 69_1 Japanese medaka 18 12
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 8 6
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 14 9
No Yes Danio rerio 69_9 Zebrafish 20 14
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 4
No Yes Ciona intestinalis 69 Vase tunicate 7 5
No Yes Drosophila melanogaster 69_5 Fruit fly 4 4
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes NCBI 2017_08 genome   6008 3727
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   413 291
No Yes Uniprot 2018_03 genome   3573 2419
No Yes Global Ocean Sampling Expedition (GOS)   12 12
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   127 68
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   99 99
No Yes TargetDB (Targets)   15 10

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