SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Elafin-like superfamily domain assignments
in
Heterocephalus glaber v1.7-2

Assignment details

(show help)


Heterocephalus glaber v1.7-2 has 15 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000219454   0.0000111   17-59   Elafin-like  
HGL_H00000311184   0.000000144   33-84   Elafin-like  
HGL_H00000324763   0.000000183   29-79   Elafin-like  
HGL_H00000342082   0.0000000000114   30-77   Elafin-like  
  0.0000000000353   83-130   Elafin-like  
HGL_H00000361735   0.0000000000131   33-81   Elafin-like  
  0.000000011   140-185   Elafin-like  
  0.000000458   185-230   Elafin-like  
HGL_H00000361750   0.0000549   38-77   Elafin-like  
HGL_H00000361761   0.000000000497   27-75   Elafin-like  
  0.00000000051   75-122   Elafin-like  
HGL_H00000386126   0.00000000157   89-132   Elafin-like  
HGL_M00000070718-1   0.0000000000209   29-76   Elafin-like  
HGL_M00000070718-2   0.000000000116   29-75   Elafin-like  
HGL_M00000090511   0.00000000000123   25-76   Elafin-like  
 
Weak hits:
HGL_H00000307694   0.00017   35-63   Elafin-like  
HGL_H00000402388   0.0523   20-41   Elafin-like  
HGL_H00000416193   0.0484   168-195   Elafin-like  
HGL_N10019113   0.00157   29-67   Elafin-like  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Elafin-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   21160 21160
No Yes Homo sapiens 76_38 Human 49 33
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 21 13
No Yes Gorilla gorilla 76_3.1 Western gorilla 22 14
No Yes Pongo abelii 76_2 Sumatran orangutan 18 13
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 24 15
No Yes Papio anubis 76 Olive baboon 29 20
No Yes Macaca mulatta 76_1 Rhesus monkey 36 25
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 29 22
No Yes Otolemur garnettii 76_3 Small-eared galago 20 12
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 14
No Yes Rattus norvegicus 76_5.0 Norway rat 33 26
No Yes Mus musculus 76_38 House mouse 44 34
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 17 12
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 19 12
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 11
No Yes Cavia porcellus 76_3 Domestic guinea pig 19 13
No Yes Oryctolagus cuniculus 76_2 Rabbit 15 10
No Yes Ochotona princeps 76 American pika 18 10
No Yes Tupaia belangeri 76 Northern tree shrew 15 10
No Yes Sus scrofa 76_10.2 Pig 26 19
No Yes Bos taurus 76_3.1 Cattle 37 26
No Yes Ovis aries 76_3.1 Sheep 24 17
No Yes Vicugna pacos 76_1 Alpaca 12 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 14 11
No Yes Mustela putorius furo 76_1.0 Domestic ferret 26 16
No Yes Ailuropoda melanoleuca 76_1 Giant panda 25 16
No Yes Canis familiaris 76_3.1 Dog 28 18
No Yes Felis catus 76_6.2 Domestic cat 22 14
No Yes Equus caballus 76_2 Horse 23 16
No Yes Myotis lucifugus 76_2.0 Little brown bat 27 17
No Yes Pteropus vampyrus 76_1 Large flying fox 19 13
No Yes Sorex araneus 76_1 European shrew 13 8
No Yes Erinaceus europaeus 76 Western European hedgehog 11 8
No Yes Procavia capensis 76_1 Cape rock hyrax 12 9
No Yes Loxodonta africana 76_3 African savanna elephant 23 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 35 26
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 18 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 8
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 27 16
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 20 12
No Yes Ornithorhynchus anatinus 76_5 Platypus 18 11
No Yes Saccoglossus kowalevskii v3.0   663 133
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 5
No Yes Meleagris gallopavo 76_2 Turkey 25 11
No Yes Gallus gallus 76_4 Chicken 21 7
No Yes Anas platyrhynchos 76_1.0 Mallard 12 8
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 10 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 26 12
No Yes Anolis carolinensis 76_2.0 Green anole 41 24
No Yes Xenopus laevis African clawed frog 6 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 10 9
No Yes Latimeria chalumnae 76_1 Coelacanth 7 5
No Yes Lepisosteus oculatus 76 Spotted gar 9 7
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 9 9
No Yes Takifugu rubripes 76_4 Torafugu 25 24
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 7 7
No Yes Oryzias latipes 76_1 Japanese medaka 13 8
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 7 7
No Yes Poecilia formosa 76 Amazon molly 9 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 28 15
No Yes Astyanax mexicanus 76 Mexican tetra 13 9
No Yes Danio rerio 76_9 Zebrafish 12 10
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 44 15
No Yes Adineta vaga   5 5
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 23 17
No Yes Lottia gigantea Owl limpet 38 17
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   9 8
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 4
No Yes Heliconius melpomene Postman butterfly 3 3
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 7 6
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 5
No Yes Linepithema humile v1.1 Argentine ant 5 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 5
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 5
No Yes Atta cephalotes v1.1   6 5
No Yes Camponotus floridanus v3.3 Florida carpenter ant 7 6
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   4 4
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   4 4
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   5 4
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 5 5
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 5 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 3 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   4 4
No Yes Daphnia pulex Common water flea 4 2
No Yes Strigamia maritima 22   18 14
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Pristionchus pacificus   3 2
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Onchocerca volvulus 22   6 4
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   10 4
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   9 4
No Yes Caenorhabditis elegans 76_235 Roundworm 7 4
No Yes Caenorhabditis briggsae 2   7 4
No Yes Trichinella spiralis 22   48 23
No Yes Mnemiopsis leidyi Sea walnut 3 1
No Yes Acropora digitifera v1.0   18 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 16 7
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   4 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 21 15
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 5 5
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 3
No Yes Homo sapiens 75_37 (old version GRC) Human 51 34
No Yes Homo sapiens (NCBI version) Human 31 20
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 25 20
No Yes Heliconius numata (Incomplete)   4 4
No Yes Loa loa v3.3 (Request) Eye worm 7 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 26 16
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 21 13
No Yes Gorilla gorilla 69_3.1 Western gorilla 21 13
No Yes Pongo abelii 69_2 Sumatran orangutan 17 12
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 22 13
No Yes Macaca mulatta 69_1 Rhesus monkey 23 15
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 21 14
No Yes Otolemur garnettii 69_3 Small-eared galago 18 11
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 14
No Yes Rattus norvegicus 69_3.4 Norway rat 28 22
No Yes Mus musculus 69_38 House mouse 25 20
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 15 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 12
No Yes Cavia porcellus 69_3 Domestic guinea pig 19 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 15 10
No Yes Ochotona princeps 69 American pika 18 10
No Yes Tupaia belangeri 69 Northern tree shrew 15 10
No Yes Sus scrofa 69_10.2 Pig 20 14
No Yes Bos taurus 69_3.1 Cattle 28 21
No Yes Vicugna pacos 69_1 Alpaca 12 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 9
No Yes Mustela putorius furo 69_1.0 Domestic ferret 26 16
No Yes Ailuropoda melanoleuca 69_1 Giant panda 24 15
No Yes Canis familiaris 69_3.1 Dog 26 17
No Yes Felis catus 69 Domestic cat 19 11
No Yes Equus caballus 69_2 Horse 22 15
No Yes Myotis lucifugus 69_2.0 Little brown bat 27 17
No Yes Pteropus vampyrus 69_1 Large flying fox 17 11
No Yes Sorex araneus 69_1 European shrew 13 8
No Yes Erinaceus europaeus 69 Western European hedgehog 11 8
No Yes Procavia capensis 69_1 Cape rock hyrax 12 9
No Yes Loxodonta africana 69_3 African savanna elephant 21 16
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 15 10
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 16 9
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 8
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 21 13
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 20 12
No Yes Ornithorhynchus anatinus 69_5 Platypus 18 11
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 4
No Yes Meleagris gallopavo 69_2 Turkey 12 7
No Yes Gallus gallus 69_2 Chicken 11 7
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 21 9
No Yes Anolis carolinensis 69_2.0 Green anole 20 12
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 8 7
No Yes Latimeria chalumnae 69_1 Coelacanth 7 5
No Yes Gadus morhua 69_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 69_4 Torafugu 10 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 6 6
No Yes Oryzias latipes 69_1 Japanese medaka 12 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 7 7
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 18 10
No Yes Danio rerio 69_9 Zebrafish 10 8
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 6 3
No Yes NCBI 2017_08 genome   8117 4887
No Yes STRING v9.0.5 (STRING)   581 401
No Yes Uniprot 2018_03 genome   7573 4462
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   22 22
No Yes TargetDB (Targets)   10 9

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]