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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza glumaepatula 22

Assignment details

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Oryza glumaepatula 22 has 181 significant domains in 126 proteins.

     

Sequence ID   Evalue   Region   Family  
OGLUM01G02850.1   2.09e-29   176-288   B3 DNA binding domain  
OGLUM01G02860.1   2.09e-29   131-246   B3 DNA binding domain  
OGLUM01G09570.1   0.000000353   180-285   B3 DNA binding domain  
OGLUM01G09880.1   3.53e-37   113-251   B3 DNA binding domain  
OGLUM01G09880.2   3.92e-37   113-251   B3 DNA binding domain  
OGLUM01G18360.1   9.55e-29   118-227   B3 DNA binding domain  
OGLUM01G29850.1   2.35e-43   144-284   B3 DNA binding domain  
OGLUM01G31260.1   5.62e-30   213-308   B3 DNA binding domain  
OGLUM01G32660.1   1.45e-17   181-279   B3 DNA binding domain  
OGLUM01G33400.1   1.41e-23   270-366   B3 DNA binding domain  
  4.32e-21   17-125   B3 DNA binding domain  
OGLUM01G33420.1   1.96e-21   6-115   B3 DNA binding domain  
OGLUM01G33420.2   1.96e-21   6-115   B3 DNA binding domain  
OGLUM01G33420.3   1.96e-21   6-115   B3 DNA binding domain  
OGLUM01G33420.4   1.96e-21   6-115   B3 DNA binding domain  
OGLUM01G35360.1   2.62e-47   158-313   B3 DNA binding domain  
OGLUM01G45160.1   1.77e-22   76-174   B3 DNA binding domain  
  0.0000000000000706   577-667   B3 DNA binding domain  
OGLUM01G45580.1   9.55e-22   532-626   B3 DNA binding domain  
OGLUM01G46840.1   4.19e-40   121-258   B3 DNA binding domain  
OGLUM01G46840.2   4.05e-40   121-258   B3 DNA binding domain  
OGLUM01G49620.1   0.00000000051   56-149   B3 DNA binding domain  
OGLUM02G03280.1   1.24e-41   138-278   B3 DNA binding domain  
OGLUM02G04770.1   1.44e-48   119-263   B3 DNA binding domain  
OGLUM02G07480.1   3.34e-18   12-112   B3 DNA binding domain  
  0.0000000000000216   188-257   B3 DNA binding domain  
OGLUM02G14800.1   0.000000000000131   125-222   B3 DNA binding domain  
  0.00000000000824   4-90   B3 DNA binding domain  
OGLUM02G14800.2   0.000000000000131   125-222   B3 DNA binding domain  
  0.00000000000824   4-90   B3 DNA binding domain  
OGLUM02G14800.3   0.000000000000131   125-222   B3 DNA binding domain  
  0.00000000000824   4-90   B3 DNA binding domain  
OGLUM02G15230.1   0.0000000196   526-618   B3 DNA binding domain  
OGLUM02G15230.2   0.0000000182   489-581   B3 DNA binding domain  
OGLUM02G15230.3   0.0000000179   482-574   B3 DNA binding domain  
OGLUM02G15230.4   0.0000000153   442-534   B3 DNA binding domain  
OGLUM02G15230.5   0.0000000153   440-532   B3 DNA binding domain  
OGLUM02G15720.1   1.29e-18   27-126   B3 DNA binding domain  
OGLUM02G15730.1   5.3e-18   27-132   B3 DNA binding domain  
OGLUM02G20880.1   4.32e-44   117-257   B3 DNA binding domain  
OGLUM02G23240.1   1.96e-16   378-471   B3 DNA binding domain  
  0.00000000000275   999-1070   B3 DNA binding domain  
OGLUM02G25270.1   8.76e-29   116-222   B3 DNA binding domain  
OGLUM02G28660.1   5.36e-29   92-200   B3 DNA binding domain  
OGLUM02G34080.1   3.66e-18   1267-1362   B3 DNA binding domain  
OGLUM02G34080.2   3.27e-18   1170-1265   B3 DNA binding domain  
OGLUM03G01630.1   6.93e-29   34-125   B3 DNA binding domain  
OGLUM03G06210.1   4.12e-24   130-227   B3 DNA binding domain  
OGLUM03G08230.1   5.69e-19   298-401   B3 DNA binding domain  
  0.00000000000000275   441-532   B3 DNA binding domain  
OGLUM03G08230.2   8.24e-18   298-394   B3 DNA binding domain  
  0.00000000000000275   427-518   B3 DNA binding domain  
OGLUM03G08230.4   1.47e-19   13-116   B3 DNA binding domain  
  7.85e-16   156-247   B3 DNA binding domain  
OGLUM03G23890.1   0.000000000000222   14-122   B3 DNA binding domain  
OGLUM03G24000.1   0.0000000133   160-256   B3 DNA binding domain  
OGLUM03G24000.2   0.0000000122   147-243   B3 DNA binding domain  
OGLUM03G24000.3   0.0000000126   160-256   B3 DNA binding domain  
OGLUM03G24000.4   0.00000001   124-220   B3 DNA binding domain  
OGLUM03G27120.1   1.96e-23   22-121   B3 DNA binding domain  
  5.89e-18   213-319   B3 DNA binding domain  
  4.51e-17   411-514   B3 DNA binding domain  
OGLUM03G27130.1   5.69e-20   23-121   B3 DNA binding domain  
  5.69e-18   223-328   B3 DNA binding domain  
  0.00000000000000249   650-755   B3 DNA binding domain  
  0.00000000000000327   442-523   B3 DNA binding domain  
OGLUM03G27130.2   6.47e-20   23-121   B3 DNA binding domain  
  1.59e-19   522-605   B3 DNA binding domain  
  6.47e-18   223-328   B3 DNA binding domain  
  0.00000000000000275   726-831   B3 DNA binding domain  
  0.00000000000000353   442-523   B3 DNA binding domain  
OGLUM03G27140.1   1.96e-23   333-426   B3 DNA binding domain  
  5.3e-21   671-771   B3 DNA binding domain  
  4.12e-20   116-215   B3 DNA binding domain  
  1.02e-19   1083-1191   B3 DNA binding domain  
  4.71e-19   874-975   B3 DNA binding domain  
  5.49e-19   500-607   B3 DNA binding domain  
OGLUM03G27140.2   1.83e-23   333-426   B3 DNA binding domain  
  5.1e-21   653-753   B3 DNA binding domain  
  3.92e-20   116-215   B3 DNA binding domain  
  1e-19   1065-1173   B3 DNA binding domain  
  4.71e-19   856-957   B3 DNA binding domain  
  9.81e-17   500-594   B3 DNA binding domain  
OGLUM03G27190.1   7.65e-25   99-197   B3 DNA binding domain  
  1.59e-23   395-493   B3 DNA binding domain  
  1.2e-21   286-376   B3 DNA binding domain  
  1.29e-21   722-821   B3 DNA binding domain  
  7.06e-18   923-1021   B3 DNA binding domain  
  0.00000000000000216   584-683   B3 DNA binding domain  
OGLUM03G27210.1   2.75e-21   69-172   B3 DNA binding domain  
OGLUM03G27220.1   2.16e-22   28-127   B3 DNA binding domain  
  1.02e-17   388-472   B3 DNA binding domain  
  0.00000000000000314   596-685   B3 DNA binding domain  
  0.00000000000051   245-338   B3 DNA binding domain  
OGLUM04G08100.1   0.00000000000108   20-117   B3 DNA binding domain  
OGLUM04G08130.1   1.51e-17   7-90   B3 DNA binding domain  
  0.0000000000000196   170-278   B3 DNA binding domain  
OGLUM04G08150.1   0.00000000000000114   21-125   B3 DNA binding domain  
OGLUM04G08160.1   0.0000000000139   3-64   B3 DNA binding domain  
OGLUM04G10060.1   0.00000000000000334   90-189   B3 DNA binding domain  
OGLUM04G13380.1   5.1e-45   110-255   B3 DNA binding domain  
OGLUM04G13380.2   4.05e-45   110-255   B3 DNA binding domain  
OGLUM04G22780.1   5.62e-29   84-175   B3 DNA binding domain  
OGLUM04G28480.1   3.92e-45   214-353   B3 DNA binding domain  
OGLUM04G29070.1   8.11e-48   146-290   B3 DNA binding domain  
OGLUM04G29070.2   8.11e-48   142-286   B3 DNA binding domain  
OGLUM04G29460.1   1.1e-18   296-393   B3 DNA binding domain  
OGLUM04G29470.1   6.15e-19   240-336   B3 DNA binding domain  
OGLUM04G30530.1   2.09e-26   111-231   B3 DNA binding domain  
OGLUM05G06170.1   0.000000000000216   8-92   B3 DNA binding domain  
OGLUM05G08530.1   0.00000589   272-371   B3 DNA binding domain  
OGLUM05G08830.1   0.00000589   276-332   B3 DNA binding domain  
OGLUM05G21650.1   1.73e-24   132-228   B3 DNA binding domain  
OGLUM05G21650.2   1.37e-24   132-228   B3 DNA binding domain  
OGLUM05G23980.1   3.79e-39   120-281   B3 DNA binding domain  
OGLUM05G23980.2   3.79e-39   120-281   B3 DNA binding domain  
OGLUM05G26380.1   2.62e-28   199-319   B3 DNA binding domain  
OGLUM05G27420.1   2.75e-43   136-258   B3 DNA binding domain  
OGLUM05G27420.2   2.75e-43   136-258   B3 DNA binding domain  
OGLUM05G27420.3   2.75e-43   136-258   B3 DNA binding domain  
OGLUM06G00440.1   4.19e-25   29-133   B3 DNA binding domain  
OGLUM06G00600.1   2.55e-17   299-399   B3 DNA binding domain  
OGLUM06G06330.1   7.06e-24   132-230   B3 DNA binding domain  
OGLUM06G06330.2   7.06e-24   132-230   B3 DNA binding domain  
OGLUM06G06490.1   2.49e-44   117-256   B3 DNA binding domain  
OGLUM06G22930.1   1.04e-19   140-244   B3 DNA binding domain  
  0.000000000000194   316-409   B3 DNA binding domain  
  0.0000000000275   12-125   B3 DNA binding domain  
OGLUM06G26000.1   2.49e-48   119-263   B3 DNA binding domain  
OGLUM06G26560.1   1.16e-28   124-230   B3 DNA binding domain  
OGLUM06G26560.2   1.16e-28   124-230   B3 DNA binding domain  
OGLUM06G27960.1   3.14e-43   110-250   B3 DNA binding domain  
OGLUM07G04870.1   4.19e-16   484-595   B3 DNA binding domain  
  0.0000000000000615   114-230   B3 DNA binding domain  
OGLUM07G04880.1   0.00000000000615   120-233   B3 DNA binding domain  
OGLUM07G05050.1   1.11e-19   104-208   B3 DNA binding domain  
OGLUM07G08970.1   6.15e-21   69-168   B3 DNA binding domain  
OGLUM07G18530.1   2.62e-19   453-555   B3 DNA binding domain  
OGLUM07G18530.2   2.49e-19   453-555   B3 DNA binding domain  
OGLUM07G26430.1   2.88e-21   360-463   B3 DNA binding domain  
OGLUM07G26430.2   3.01e-21   360-463   B3 DNA binding domain  
OGLUM08G00080.1   4.19e-16   205-293   B3 DNA binding domain  
OGLUM08G00080.2   5.49e-16   252-340   B3 DNA binding domain  
OGLUM08G03520.1   1.31e-27   68-162   B3 DNA binding domain  
OGLUM08G09520.1   0.00000000589   240-291   B3 DNA binding domain  
OGLUM08G09560.1   0.00000392   339-384   B3 DNA binding domain  
OGLUM08G11380.1   0.00000000000012   74-144   B3 DNA binding domain  
OGLUM08G11390.1   6.67e-20   12-105   B3 DNA binding domain  
  6.08e-19   422-521   B3 DNA binding domain  
  0.0000000000104   206-310   B3 DNA binding domain  
OGLUM08G22050.1   4.84e-42   122-261   B3 DNA binding domain  
OGLUM08G22050.2   4.71e-42   89-228   B3 DNA binding domain  
OGLUM09G03800.1   3.53e-22   709-807   B3 DNA binding domain  
  6.47e-21   222-322   B3 DNA binding domain  
  9.42e-20   1410-1508   B3 DNA binding domain  
  1.26e-17   581-686   B3 DNA binding domain  
  1.29e-17   1070-1176   B3 DNA binding domain  
  3.92e-17   1190-1293   B3 DNA binding domain  
  6.08e-17   918-1017   B3 DNA binding domain  
  0.00000000000000549   430-534   B3 DNA binding domain  
  0.0000000000000145   98-185   B3 DNA binding domain  
OGLUM09G03830.1   2.55e-18   253-356   B3 DNA binding domain  
  3.73e-18   21-124   B3 DNA binding domain  
OGLUM09G19780.1   1.7e-25   289-389   B3 DNA binding domain  
  2.75e-22   31-127   B3 DNA binding domain  
OGLUM09G19780.2   1.44e-25   259-359   B3 DNA binding domain  
  2.35e-20   14-97   B3 DNA binding domain  
OGLUM09G19780.3   1.7e-25   289-389   B3 DNA binding domain  
  2.62e-22   31-127   B3 DNA binding domain  
OGLUM10G02950.1   0.000000000294   5-66   B3 DNA binding domain  
OGLUM10G05560.1   0.0000000000765   6-65   B3 DNA binding domain  
OGLUM10G13220.1   1.44e-29   117-232   B3 DNA binding domain  
OGLUM10G17040.1   2.09e-28   35-139   B3 DNA binding domain  
OGLUM11G03240.1   9.55e-30   35-130   B3 DNA binding domain  
OGLUM11G08850.1   0.0000785   179-220   B3 DNA binding domain  
OGLUM11G14710.1   4.02e-41   142-276   B3 DNA binding domain  
OGLUM11G18070.1   0.000000000167   4-79   B3 DNA binding domain  
OGLUM12G04180.1   1.22e-30   33-127   B3 DNA binding domain  
OGLUM12G04180.2   1.57e-30   33-127   B3 DNA binding domain  
OGLUM12G13560.1   3.24e-41   140-276   B3 DNA binding domain  
OGLUM12G20370.1   7.85e-49   117-261   B3 DNA binding domain  
 
Weak hits:
OGLUM01G30160.1   0.000106   265-329   B3 DNA binding domain  
OGLUM02G04860.1   0.0381   130-167   B3 DNA binding domain  
OGLUM03G36780.1   0.0373   221-286   B3 DNA binding domain  
OGLUM05G08710.1   0.0184   292-340   B3 DNA binding domain  
OGLUM08G09980.1   0.00373   229-292   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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