SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


DNA-binding pseudobarrel domain superfamily domain assignments
in
Hordeum vulgare 22

Assignment details

(show help)


Hordeum vulgare 22 has 308 significant domains in 227 proteins.

     

Sequence ID   Evalue   Region   Family  
MLOC_11014.10   3.79e-28   34-128   B3 DNA binding domain  
MLOC_11014.6   3.79e-28   34-128   B3 DNA binding domain  
MLOC_11014.7   6.67e-28   34-128   B3 DNA binding domain  
MLOC_11014.8   3.79e-28   34-128   B3 DNA binding domain  
MLOC_11014.9   3.79e-28   34-128   B3 DNA binding domain  
MLOC_12054.1   4.32e-20   111-208   B3 DNA binding domain  
MLOC_12054.2   0.0000000000216   2-60   B3 DNA binding domain  
MLOC_12054.3   4.32e-20   111-208   B3 DNA binding domain  
MLOC_12054.4   3.53e-16   10-85   B3 DNA binding domain  
MLOC_12054.5   0.0000000000216   2-60   B3 DNA binding domain  
MLOC_12054.6   1.22e-20   38-135   B3 DNA binding domain  
MLOC_14005.1   9.02e-20   1-86   B3 DNA binding domain  
MLOC_14584.1   1.28e-41   119-259   B3 DNA binding domain  
MLOC_14584.2   1.28e-41   116-256   B3 DNA binding domain  
MLOC_15725.2   1.63e-18   66-163   B3 DNA binding domain  
MLOC_15725.3   1.8e-18   80-177   B3 DNA binding domain  
MLOC_15725.4   0.000000000216   7-58   B3 DNA binding domain  
MLOC_15725.5   0.0000000000314   7-57   B3 DNA binding domain  
MLOC_15725.6   0.000000000216   7-58   B3 DNA binding domain  
MLOC_16480.1   1.49e-17   22-119   B3 DNA binding domain  
  8.44e-16   181-289   B3 DNA binding domain  
MLOC_16480.2   1.55e-17   22-119   B3 DNA binding domain  
  8.83e-16   191-299   B3 DNA binding domain  
MLOC_16480.3   1.47e-17   22-119   B3 DNA binding domain  
  8.44e-16   181-289   B3 DNA binding domain  
MLOC_16480.4   1.55e-17   22-119   B3 DNA binding domain  
  8.83e-16   191-299   B3 DNA binding domain  
MLOC_16480.5   1.45e-17   22-119   B3 DNA binding domain  
  8.24e-16   174-282   B3 DNA binding domain  
MLOC_16480.6   0.0000000000000129   1-93   B3 DNA binding domain  
MLOC_18038.1   5.89e-22   23-123   B3 DNA binding domain  
MLOC_18038.2   1.92e-21   32-132   B3 DNA binding domain  
  0.00000000412   248-324   B3 DNA binding domain  
MLOC_18401.1   1.27e-38   127-263   B3 DNA binding domain  
MLOC_18401.2   1.14e-38   69-205   B3 DNA binding domain  
MLOC_18435.1   0.0000000000000255   294-388   B3 DNA binding domain  
MLOC_18435.2   0.0000000000000235   294-388   B3 DNA binding domain  
MLOC_18435.3   0.0000000000000116   294-388   B3 DNA binding domain  
MLOC_18435.4   0.00000000000353   6-69   B3 DNA binding domain  
MLOC_18435.5   0.0000000000000216   294-388   B3 DNA binding domain  
MLOC_19134.1   1.05e-24   42-146   B3 DNA binding domain  
MLOC_20970.1   9.42e-23   110-204   B3 DNA binding domain  
MLOC_20970.2   9.22e-23   103-197   B3 DNA binding domain  
MLOC_20970.3   7.46e-23   56-150   B3 DNA binding domain  
MLOC_23884.1   3.34e-22   49-149   B3 DNA binding domain  
  6.47e-19   280-376   B3 DNA binding domain  
MLOC_25058.1   9.81e-24   201-297   B3 DNA binding domain  
MLOC_25058.2   9.81e-24   203-299   B3 DNA binding domain  
MLOC_25537.1   3.27e-29   73-136   B3 DNA binding domain  
MLOC_25537.2   1.1e-28   174-237   B3 DNA binding domain  
MLOC_28796.1   0.0000000000392   184-258   B3 DNA binding domain  
  0.0334   8-57   B3 DNA binding domain  
MLOC_28796.2   0.0000000000471   208-281   B3 DNA binding domain  
  0.00726   3-80   B3 DNA binding domain  
MLOC_28796.4   0.0000000000471   208-281   B3 DNA binding domain  
  0.00726   3-80   B3 DNA binding domain  
MLOC_28796.5   0.0000000000942   330-403   B3 DNA binding domain  
  0.00000000255   21-85   B3 DNA binding domain  
  0.0000314   108-202   B3 DNA binding domain  
MLOC_3052.1   0.00000000000314   6-76   B3 DNA binding domain  
MLOC_31953.1   0.00000942   19-48   B3 DNA binding domain  
MLOC_36861.1   1.57e-16   362-446   B3 DNA binding domain  
MLOC_37086.2   7.85e-17   122-210   B3 DNA binding domain  
MLOC_37768.1   3.14e-20   16-114   B3 DNA binding domain  
  5.1e-16   397-502   B3 DNA binding domain  
  0.000000000000104   220-320   B3 DNA binding domain  
MLOC_37768.2   3.14e-20   16-114   B3 DNA binding domain  
  5.3e-16   399-504   B3 DNA binding domain  
  0.000000000000106   222-322   B3 DNA binding domain  
MLOC_37768.3   2.16e-17   2-79   B3 DNA binding domain  
  4.71e-16   364-469   B3 DNA binding domain  
  0.0000000000000922   187-287   B3 DNA binding domain  
MLOC_37768.4   2.16e-17   2-79   B3 DNA binding domain  
  4.71e-16   365-470   B3 DNA binding domain  
  0.0000000000000961   187-288   B3 DNA binding domain  
MLOC_37768.5   2.16e-17   2-79   B3 DNA binding domain  
  4.71e-16   364-469   B3 DNA binding domain  
  0.0000000000000922   187-287   B3 DNA binding domain  
MLOC_38232.1   1.12e-41   24-159   B3 DNA binding domain  
MLOC_38232.3   1.12e-41   24-159   B3 DNA binding domain  
MLOC_38232.4   2.88e-42   24-161   B3 DNA binding domain  
MLOC_38232.5   3.27e-23   17-121   B3 DNA binding domain  
MLOC_38822.1   3.14e-30   46-156   B3 DNA binding domain  
MLOC_4129.1   2.75e-19   206-295   B3 DNA binding domain  
  0.0000000000000111   423-521   B3 DNA binding domain  
MLOC_4129.2   2.75e-19   206-295   B3 DNA binding domain  
  0.0000000000000111   423-521   B3 DNA binding domain  
MLOC_4129.3   2.75e-19   206-295   B3 DNA binding domain  
  0.0000000000000111   423-521   B3 DNA binding domain  
MLOC_4129.4   0.00000000000000334   129-227   B3 DNA binding domain  
MLOC_4129.5   5.89e-19   18-113   B3 DNA binding domain  
MLOC_44012.1   1.96e-29   48-144   B3 DNA binding domain  
MLOC_45867.1   0.000000000726   6-83   B3 DNA binding domain  
MLOC_4657.1   4.32e-21   366-472   B3 DNA binding domain  
MLOC_4657.2   4.32e-21   360-466   B3 DNA binding domain  
MLOC_47091.1   2.09e-24   39-132   B3 DNA binding domain  
MLOC_47091.2   1.83e-24   39-132   B3 DNA binding domain  
MLOC_48372.1   2.75e-16   82-178   B3 DNA binding domain  
MLOC_48372.2   1.86e-16   56-152   B3 DNA binding domain  
MLOC_48938.1   0.00000000144   36-84   B3 DNA binding domain  
MLOC_50915.1   0.00000000000000222   308-407   B3 DNA binding domain  
MLOC_50915.2   0.00000000000000235   308-407   B3 DNA binding domain  
MLOC_5109.1   1.49e-19   72-178   B3 DNA binding domain  
MLOC_5109.2   1.43e-19   20-126   B3 DNA binding domain  
MLOC_51932.2   4.58e-48   121-265   B3 DNA binding domain  
MLOC_54060.1   2.55e-20   37-136   B3 DNA binding domain  
  1.14e-19   197-294   B3 DNA binding domain  
  1.49e-18   563-667   B3 DNA binding domain  
  9.02e-18   403-500   B3 DNA binding domain  
MLOC_54060.2   1.71e-20   37-136   B3 DNA binding domain  
  7.46e-20   197-294   B3 DNA binding domain  
  5.89e-18   403-500   B3 DNA binding domain  
MLOC_54060.3   2.55e-20   37-136   B3 DNA binding domain  
  1.14e-19   197-294   B3 DNA binding domain  
  1.49e-18   563-667   B3 DNA binding domain  
  9.02e-18   403-500   B3 DNA binding domain  
MLOC_54060.4   2.55e-20   37-136   B3 DNA binding domain  
  1.14e-19   197-294   B3 DNA binding domain  
  1.49e-18   563-667   B3 DNA binding domain  
  9.02e-18   403-500   B3 DNA binding domain  
MLOC_54060.5   1.71e-20   37-136   B3 DNA binding domain  
  7.46e-20   197-294   B3 DNA binding domain  
  5.89e-18   403-500   B3 DNA binding domain  
MLOC_54060.6   9.81e-21   37-136   B3 DNA binding domain  
  4.32e-20   197-294   B3 DNA binding domain  
MLOC_54060.7   2.16e-20   37-136   B3 DNA binding domain  
  9.22e-20   197-294   B3 DNA binding domain  
  7.26e-18   403-500   B3 DNA binding domain  
MLOC_54810.1   0.000000000000392   198-315   B3 DNA binding domain  
  0.0000000000471   10-104   B3 DNA binding domain  
MLOC_54810.2   5.89e-17   11-111   B3 DNA binding domain  
  0.000000000000942   379-496   B3 DNA binding domain  
  0.000000000112   191-285   B3 DNA binding domain  
MLOC_54810.5   1.82e-17   11-111   B3 DNA binding domain  
MLOC_54810.6   0.00000000000863   6-56   B3 DNA binding domain  
MLOC_54810.7   2.16e-18   11-111   B3 DNA binding domain  
MLOC_54810.8   2.75e-18   11-111   B3 DNA binding domain  
MLOC_54810.9   0.00000000000863   6-56   B3 DNA binding domain  
MLOC_5512.1   7.59e-30   169-266   B3 DNA binding domain  
MLOC_5512.2   7.59e-30   169-266   B3 DNA binding domain  
MLOC_55345.10   4.45e-44   139-277   B3 DNA binding domain  
MLOC_55345.13   1.83e-28   139-206   B3 DNA binding domain  
MLOC_55345.6   1.7e-42   139-279   B3 DNA binding domain  
MLOC_55345.7   4.45e-44   139-277   B3 DNA binding domain  
MLOC_55345.8   1.11e-41   139-276   B3 DNA binding domain  
MLOC_55345.9   1.11e-41   139-276   B3 DNA binding domain  
MLOC_5600.1   5.69e-23   16-114   B3 DNA binding domain  
MLOC_5600.2   9.61e-23   16-114   B3 DNA binding domain  
MLOC_5600.3   9.61e-23   16-114   B3 DNA binding domain  
MLOC_5600.4   1.08e-22   32-130   B3 DNA binding domain  
MLOC_5600.5   5.69e-23   16-114   B3 DNA binding domain  
MLOC_5600.6   8.63e-23   16-114   B3 DNA binding domain  
MLOC_5600.7   8.63e-23   16-114   B3 DNA binding domain  
MLOC_56530.1   1.57e-28   33-129   B3 DNA binding domain  
MLOC_56530.2   1.44e-28   33-129   B3 DNA binding domain  
MLOC_56530.3   1.31e-28   33-129   B3 DNA binding domain  
MLOC_56567.1   3.79e-29   166-274   B3 DNA binding domain  
MLOC_57250.1   0.000033   27-128   B3 DNA binding domain  
MLOC_58330.1   1.15e-47   120-264   B3 DNA binding domain  
MLOC_58330.2   1.22e-47   149-293   B3 DNA binding domain  
MLOC_58330.3   1.15e-47   120-264   B3 DNA binding domain  
MLOC_58330.5   1.44e-48   29-173   B3 DNA binding domain  
MLOC_58330.7   7.85e-48   29-173   B3 DNA binding domain  
MLOC_58330.8   4.19e-17   45-90   Type II restriction endonuclease effector domain  
MLOC_59439.1   4.32e-21   18-119   B3 DNA binding domain  
MLOC_59439.10   6.08e-19   149-255   B3 DNA binding domain  
  0.000000000000182   30-111   B3 DNA binding domain  
MLOC_59439.11   5.3e-19   133-239   B3 DNA binding domain  
  0.0000000000000145   1-95   B3 DNA binding domain  
MLOC_59439.12   1e-17   4-83   B3 DNA binding domain  
MLOC_59439.2   4.32e-21   18-119   B3 DNA binding domain  
MLOC_59439.3   4.32e-21   18-119   B3 DNA binding domain  
MLOC_59439.4   4.71e-21   18-119   B3 DNA binding domain  
MLOC_59439.5   4.9e-21   18-119   B3 DNA binding domain  
MLOC_59439.6   4.12e-21   18-119   B3 DNA binding domain  
MLOC_59439.7   6.67e-21   18-119   B3 DNA binding domain  
MLOC_59439.8   2.35e-20   18-119   B3 DNA binding domain  
  2.55e-18   421-527   B3 DNA binding domain  
  2.16e-16   280-383   B3 DNA binding domain  
MLOC_59439.9   8.04e-21   18-119   B3 DNA binding domain  
MLOC_60460.3   3.92e-16   528-635   B3 DNA binding domain  
MLOC_62237.1   1.35e-21   379-479   B3 DNA binding domain  
MLOC_62237.3   7.46e-22   239-339   B3 DNA binding domain  
MLOC_62500.1   0.00000000000135   4-55   B3 DNA binding domain  
MLOC_62500.2   7.26e-17   5-110   B3 DNA binding domain  
  4.12e-16   173-267   B3 DNA binding domain  
MLOC_63193.1   1.28e-42   60-200   B3 DNA binding domain  
MLOC_63193.2   1.44e-42   60-200   B3 DNA binding domain  
MLOC_63193.3   5.1e-43   60-200   B3 DNA binding domain  
MLOC_63193.4   5.1e-43   60-200   B3 DNA binding domain  
MLOC_63261.1   3.14e-29   156-250   B3 DNA binding domain  
MLOC_63938.1   8.37e-48   118-260   B3 DNA binding domain  
MLOC_64376.1   5.89e-16   5-101   B3 DNA binding domain  
  0.000000000196   209-316   B3 DNA binding domain  
MLOC_64376.10   5.3e-16   5-101   B3 DNA binding domain  
  0.000000000177   189-296   B3 DNA binding domain  
MLOC_64376.11   1.43e-16   5-101   B3 DNA binding domain  
MLOC_64376.12   5.89e-16   5-101   B3 DNA binding domain  
  0.000000000196   209-316   B3 DNA binding domain  
MLOC_64376.13   5.49e-16   5-101   B3 DNA binding domain  
  0.000000000184   189-296   B3 DNA binding domain  
MLOC_64376.2   5.89e-16   5-101   B3 DNA binding domain  
  0.000000000196   208-315   B3 DNA binding domain  
MLOC_64376.3   5.89e-16   5-101   B3 DNA binding domain  
  0.000000000196   208-315   B3 DNA binding domain  
MLOC_64376.4   0.0000000000687   31-138   B3 DNA binding domain  
MLOC_64376.5   0.0000000000765   44-151   B3 DNA binding domain  
MLOC_64376.6   0.0000000000687   31-138   B3 DNA binding domain  
MLOC_64376.7   5.69e-16   5-101   B3 DNA binding domain  
  0.000000000192   209-316   B3 DNA binding domain  
MLOC_64376.8   5.69e-16   5-101   B3 DNA binding domain  
  0.000000000192   208-315   B3 DNA binding domain  
MLOC_64376.9   5.69e-16   5-101   B3 DNA binding domain  
  0.000000000192   208-315   B3 DNA binding domain  
MLOC_64596.1   1.01e-44   115-257   B3 DNA binding domain  
MLOC_64596.4   2.88e-25   2-99   B3 DNA binding domain  
MLOC_64596.5   8.63e-45   115-257   B3 DNA binding domain  
MLOC_64708.1   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.10   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.2   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.3   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.4   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.5   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.6   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64708.7   9.42e-22   1031-1125   B3 DNA binding domain  
  0.0000000000353   1141-1239   B3 DNA binding domain  
MLOC_64708.8   9.55e-22   1043-1137   B3 DNA binding domain  
  0.0000000000366   1153-1251   B3 DNA binding domain  
MLOC_64795.1   9.16e-29   118-225   B3 DNA binding domain  
MLOC_64795.2   9.16e-29   118-225   B3 DNA binding domain  
MLOC_64795.3   9.16e-29   118-225   B3 DNA binding domain  
MLOC_64801.1   3.53e-16   266-371   B3 DNA binding domain  
  0.00000000011   41-143   B3 DNA binding domain  
MLOC_64801.2   3.53e-16   267-372   B3 DNA binding domain  
  0.000000000235   40-140   B3 DNA binding domain  
MLOC_65945.1   1.44e-36   164-306   B3 DNA binding domain  
MLOC_65945.3   3.01e-19   3-99   B3 DNA binding domain  
MLOC_65945.4   3.01e-19   3-99   B3 DNA binding domain  
MLOC_65945.5   1.05e-36   47-189   B3 DNA binding domain  
MLOC_66152.1   1.57e-48   120-264   B3 DNA binding domain  
MLOC_66152.2   1.83e-48   120-264   B3 DNA binding domain  
MLOC_66152.3   1.83e-48   120-264   B3 DNA binding domain  
MLOC_66152.4   2.88e-21   2-89   B3 DNA binding domain  
MLOC_66152.5   2.88e-21   2-89   B3 DNA binding domain  
MLOC_66387.1   4.05e-29   91-199   B3 DNA binding domain  
MLOC_66387.2   4.05e-29   91-199   B3 DNA binding domain  
MLOC_66439.1   1.44e-44   11-166   B3 DNA binding domain  
MLOC_67886.1   1.08e-17   114-203   B3 DNA binding domain  
  5.1e-16   251-344   B3 DNA binding domain  
MLOC_68151.1   5.3e-20   18-116   B3 DNA binding domain  
  1.02e-19   275-375   B3 DNA binding domain  
  9.02e-16   490-595   B3 DNA binding domain  
MLOC_68151.2   5.49e-20   18-116   B3 DNA binding domain  
  1.02e-19   275-375   B3 DNA binding domain  
  9.22e-16   492-597   B3 DNA binding domain  
MLOC_68151.3   2.75e-16   204-309   B3 DNA binding domain  
  3.27e-16   6-95   B3 DNA binding domain  
MLOC_68409.1   0.0000000000126   2-68   B3 DNA binding domain  
MLOC_68409.2   1.55e-16   113-208   B3 DNA binding domain  
MLOC_689.9   1.75e-19   103-203   B3 DNA binding domain  
  0.000000000000746   233-301   B3 DNA binding domain  
MLOC_68907.1   6.41e-40   65-201   B3 DNA binding domain  
MLOC_69727.1   4.71e-19   526-621   B3 DNA binding domain  
MLOC_69727.2   9.81e-22   526-622   B3 DNA binding domain  
MLOC_69727.3   4.19e-20   43-138   B3 DNA binding domain  
MLOC_69727.4   0.0000000000000412   53-121   B3 DNA binding domain  
MLOC_71305.1   2.94e-17   18-102   B3 DNA binding domain  
MLOC_71305.2   0.00000000000589   27-93   B3 DNA binding domain  
MLOC_71305.3   0.0000000000000687   1-76   B3 DNA binding domain  
MLOC_71395.2   1.26e-22   134-231   B3 DNA binding domain  
MLOC_71395.3   2.16e-23   18-115   B3 DNA binding domain  
MLOC_73144.1   2.22e-41   70-210   B3 DNA binding domain  
MLOC_73144.2   4.32e-42   122-262   B3 DNA binding domain  
MLOC_73144.4   2.35e-41   122-262   B3 DNA binding domain  
MLOC_73144.6   2.22e-41   122-262   B3 DNA binding domain  
MLOC_74058.1   3.27e-29   27-126   B3 DNA binding domain  
MLOC_74632.1   1.63e-21   37-136   B3 DNA binding domain  
  6.47e-20   195-292   B3 DNA binding domain  
  1.96e-17   403-498   B3 DNA binding domain  
  0.0000000000000149   564-668   B3 DNA binding domain  
MLOC_74632.2   4.71e-20   2-98   B3 DNA binding domain  
  8.24e-18   209-304   B3 DNA binding domain  
MLOC_75135.1   9.55e-29   171-277   B3 DNA binding domain  
MLOC_75135.2   9.16e-29   171-277   B3 DNA binding domain  
MLOC_75723.1   1.16e-18   110-192   B3 DNA binding domain  
MLOC_75723.2   1.15e-18   109-191   B3 DNA binding domain  
MLOC_75723.3   3.4e-17   7-76   B3 DNA binding domain  
MLOC_76431.1   8.04e-22   132-226   B3 DNA binding domain  
MLOC_76431.2   8.04e-22   132-226   B3 DNA binding domain  
MLOC_76431.3   5.49e-19   132-218   B3 DNA binding domain  
MLOC_7649.1   0.00000000000000149   9-105   B3 DNA binding domain  
  0.000000000000373   153-230   B3 DNA binding domain  
MLOC_7649.2   0.00000000000000149   9-105   B3 DNA binding domain  
  0.000000000000373   153-230   B3 DNA binding domain  
MLOC_7649.3   0.000000000000049   21-98   B3 DNA binding domain  
MLOC_77380.1   1.51e-16   237-332   B3 DNA binding domain  
  0.000000235   1-73   B3 DNA binding domain  
MLOC_77380.2   0.0000000294   1-75   B3 DNA binding domain  
MLOC_77438.1   0.00000000000471   171-230   B3 DNA binding domain  
MLOC_77438.2   1.44e-29   117-236   B3 DNA binding domain  
MLOC_7940.1   9.42e-30   172-281   B3 DNA binding domain  
MLOC_80432.1   0.0000173   254-351   B3 DNA binding domain  
MLOC_81102.1   6.87e-20   16-114   B3 DNA binding domain  
  0.000000000000275   239-325   B3 DNA binding domain  
 
Weak hits:
MLOC_15725.7   0.000373   2-36   B3 DNA binding domain  
MLOC_28796.3   0.0216   8-57   B3 DNA binding domain  
MLOC_28796.6   0.0049   3-80   B3 DNA binding domain  
MLOC_28796.7   0.000569   2-80   B3 DNA binding domain  
MLOC_28796.8   0.000569   2-80   B3 DNA binding domain  
MLOC_4129.6   0.00746   2-28   B3 DNA binding domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]