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Retrovirus capsid dimerization domain-like superfamily domain assignments
in
Heterocephalus glaber v1.7-2

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Heterocephalus glaber v1.7-2 has 31 significant domains in 31 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000219069   8.7e-38   34-125   SCAN domain  
HGL_H00000252463   2.11e-21   2-71   SCAN domain  
HGL_H00000268655   9.61e-38   40-131   SCAN domain  
HGL_H00000292450   6.87e-39   33-123   SCAN domain  
HGL_H00000301995   3.43e-26   102-166   SCAN domain  
HGL_H00000315664   1.19e-36   36-123   SCAN domain  
HGL_H00000321963-1   3.89e-21   39-128   SCAN domain  
HGL_H00000323148   3.75e-39   48-139   SCAN domain  
HGL_H00000324450   5.04e-36   45-132   SCAN domain  
HGL_H00000325123   4.21e-21   72-136   SCAN domain  
HGL_H00000331626   2.7e-34   41-131   SCAN domain  
HGL_H00000332433   2.11e-36   11-101   SCAN domain  
HGL_H00000334800   5.04e-35   35-119   SCAN domain  
HGL_H00000336565   1.65e-34   22-109   SCAN domain  
HGL_H00000337363   3.39e-32   38-114   SCAN domain  
HGL_H00000337724   8.24e-39   39-131   SCAN domain  
HGL_H00000339585-1   4.17e-31   25-115   SCAN domain  
HGL_H00000339585-2   1.46e-36   22-112   SCAN domain  
HGL_H00000355454   7.78e-36   15-106   SCAN domain  
HGL_H00000359802   7.78e-38   42-133   SCAN domain  
HGL_H00000366509-1   1.01e-34   43-131   SCAN domain  
HGL_H00000379168-1   2.33e-36   44-131   SCAN domain  
HGL_H00000379168-2   4.35e-30   37-126   SCAN domain  
HGL_H00000379370   5.04e-35   37-126   SCAN domain  
HGL_H00000380087   3.48e-38   39-128   SCAN domain  
HGL_H00000382011   3.85e-38   46-136   SCAN domain  
HGL_H00000382015   1.42e-39   46-137   SCAN domain  
HGL_H00000385213   2.06e-36   37-125   SCAN domain  
HGL_H00000409872-2   1.83e-34   113-203   SCAN domain  
HGL_H00000412253   1.28e-32   167-258   SCAN domain  
HGL_H00000413073-1   3.07e-32   52-141   SCAN domain  
 
Weak hits:
HGL_H00000334308   0.00133   785-826   SCAN domain  
HGL_H00000361791   0.0371   3-40   SCAN domain  
HGL_H00000380116   0.0549   475-526   Retrovirus capsid protein C-terminal domain  
HGL_M00000094921-28   0.0366   154-175   Retrovirus capsid protein C-terminal domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   123912 123912
No Yes Homo sapiens 76_38 Human 224 224
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 56 56
No Yes Gorilla gorilla 76_3.1 Western gorilla 73 73
No Yes Pongo abelii 76_2 Sumatran orangutan 57 57
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 58 58
No Yes Papio anubis 76 Olive baboon 53 53
No Yes Macaca mulatta 76_1 Rhesus monkey 90 90
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 94 94
No Yes Otolemur garnettii 76_3 Small-eared galago 47 47
No Yes Microcebus murinus 76_1 Gray mouse lemur 40 40
No Yes Rattus norvegicus 76_5.0 Norway rat 42 42
No Yes Mus musculus 76_38 House mouse 104 104
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 30 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 46 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 31 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 61 61
No Yes Oryctolagus cuniculus 76_2 Rabbit 46 46
No Yes Ochotona princeps 76 American pika 37 37
No Yes Tupaia belangeri 76 Northern tree shrew 27 27
No Yes Sus scrofa 76_10.2 Pig 49 49
No Yes Bos taurus 76_3.1 Cattle 64 64
No Yes Ovis aries 76_3.1 Sheep 82 81
No Yes Vicugna pacos 76_1 Alpaca 24 24
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 46 46
No Yes Mustela putorius furo 76_1.0 Domestic ferret 51 51
No Yes Ailuropoda melanoleuca 76_1 Giant panda 65 65
No Yes Canis familiaris 76_3.1 Dog 61 61
No Yes Felis catus 76_6.2 Domestic cat 62 62
No Yes Equus caballus 76_2 Horse 58 58
No Yes Myotis lucifugus 76_2.0 Little brown bat 50 49
No Yes Pteropus vampyrus 76_1 Large flying fox 41 41
No Yes Sorex araneus 76_1 European shrew 28 28
No Yes Erinaceus europaeus 76 Western European hedgehog 20 20
No Yes Procavia capensis 76_1 Cape rock hyrax 38 38
No Yes Loxodonta africana 76_3 African savanna elephant 77 77
No Yes Echinops telfairi 76 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 91
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 31 31
No Yes Macropus eugenii 76_1.0 Tammar wallaby 21 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 93 93
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 44 44
No Yes Ornithorhynchus anatinus 76_5 Platypus 31 31
No Yes Saccoglossus kowalevskii v3.0   7 7
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 16
No Yes Anolis carolinensis 76_2.0 Green anole 156 156
No Yes Xenopus laevis African clawed frog 7 7
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 19 16
No Yes Latimeria chalumnae 76_1 Coelacanth 39 39
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Takifugu rubripes 76_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 5 5
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 27 27
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   3 3
No Yes Rhodnius prolixus 22   2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 4
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Acropora digitifera v1.0   4 4
No Yes Amphimedon queenslandica   36 36
No Yes Amborella trichopoda 22   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 18 15
No Yes Homo sapiens 75_37 (old version GRC) Human 220 220
No Yes Homo sapiens (NCBI version) Human 83 83
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 44 44
No Yes Homo sapiens 69_37 Human 56 56
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 53 53
No Yes Gorilla gorilla 69_3.1 Western gorilla 59 59
No Yes Pongo abelii 69_2 Sumatran orangutan 51 51
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 54 54
No Yes Macaca mulatta 69_1 Rhesus monkey 53 53
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 49 49
No Yes Otolemur garnettii 69_3 Small-eared galago 46 46
No Yes Microcebus murinus 69_1 Gray mouse lemur 40 40
No Yes Rattus norvegicus 69_3.4 Norway rat 40 40
No Yes Mus musculus 69_38 House mouse 43 43
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 30 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 42
No Yes Cavia porcellus 69_3 Domestic guinea pig 54 54
No Yes Oryctolagus cuniculus 69_2 Rabbit 39 39
No Yes Ochotona princeps 69 American pika 37 37
No Yes Tupaia belangeri 69 Northern tree shrew 27 27
No Yes Sus scrofa 69_10.2 Pig 44 44
No Yes Bos taurus 69_3.1 Cattle 55 55
No Yes Vicugna pacos 69_1 Alpaca 24 24
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 46 46
No Yes Mustela putorius furo 69_1.0 Domestic ferret 50 50
No Yes Ailuropoda melanoleuca 69_1 Giant panda 55 55
No Yes Canis familiaris 69_3.1 Dog 51 51
No Yes Felis catus 69 Domestic cat 39 39
No Yes Equus caballus 69_2 Horse 52 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 47 46
No Yes Pteropus vampyrus 69_1 Large flying fox 41 41
No Yes Sorex araneus 69_1 European shrew 28 28
No Yes Erinaceus europaeus 69 Western European hedgehog 20 20
No Yes Procavia capensis 69_1 Cape rock hyrax 38 38
No Yes Loxodonta africana 69_3 African savanna elephant 62 62
No Yes Echinops telfairi 69 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 26 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 31 31
No Yes Macropus eugenii 69_1.0 Tammar wallaby 21 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 79 79
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 43 43
No Yes Ornithorhynchus anatinus 69_5 Platypus 28 28
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 16 16
No Yes Anolis carolinensis 69_2.0 Green anole 114 114
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 19 16
No Yes Latimeria chalumnae 69_1 Coelacanth 39 39
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Takifugu rubripes 69_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 69_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes NCBI 2017_08 genome   14552 14420
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes STRING v9.0.5 (STRING)   793 793
No Yes Uniprot 2018_03 genome   66936 66907
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   42 42
No Yes PDB chains (SCOP 1.75) (PDB)   16 16
No Yes Protein Data Bank (all PDB sequenc)   3117 3117
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   5731 5731
No Yes TargetDB (Targets)   15 15
No Yes UniProt viral sequences (Viral)   25200 25200

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