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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza barthii 22

Assignment details

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Oryza barthii 22 has 177 significant domains in 124 proteins.

     

Sequence ID   Evalue   Region   Family  
OBART01G02610.1   2.22e-29   178-290   B3 DNA binding domain  
OBART01G02620.1   8.24e-30   133-248   B3 DNA binding domain  
OBART01G08400.1   2.16e-20   106-189   B3 DNA binding domain  
OBART01G08640.1   4.05e-37   51-189   B3 DNA binding domain  
OBART01G26040.1   2.09e-43   84-224   B3 DNA binding domain  
OBART01G26330.1   0.0000824   200-264   B3 DNA binding domain  
OBART01G27360.1   2.88e-30   214-309   B3 DNA binding domain  
OBART01G28660.1   1.1e-17   127-225   B3 DNA binding domain  
OBART01G29350.1   1.96e-21   17-125   B3 DNA binding domain  
  4.9e-21   162-243   B3 DNA binding domain  
OBART01G29370.1   1.96e-21   6-115   B3 DNA binding domain  
OBART01G29370.2   2.35e-21   6-115   B3 DNA binding domain  
OBART01G29370.3   1.96e-21   6-115   B3 DNA binding domain  
OBART01G31160.1   3.14e-47   175-330   B3 DNA binding domain  
OBART01G40980.1   1.82e-22   106-204   B3 DNA binding domain  
  0.0000000000000746   595-685   B3 DNA binding domain  
OBART01G41410.1   4.45e-22   254-348   B3 DNA binding domain  
OBART01G42570.1   8.89e-40   121-258   B3 DNA binding domain  
OBART01G42570.2   8.63e-40   121-258   B3 DNA binding domain  
OBART02G03410.1   1.44e-41   155-295   B3 DNA binding domain  
OBART02G04960.1   1.44e-48   119-263   B3 DNA binding domain  
OBART02G07450.1   3.34e-18   12-112   B3 DNA binding domain  
  0.0000000000000216   188-257   B3 DNA binding domain  
OBART02G15330.1   0.00000000122   300-395   B3 DNA binding domain  
OBART02G15610.1   9.02e-19   27-126   B3 DNA binding domain  
OBART02G15620.1   1.82e-17   27-132   B3 DNA binding domain  
OBART02G20600.1   4.58e-44   117-257   B3 DNA binding domain  
OBART02G22890.1   1.9e-16   348-441   B3 DNA binding domain  
  0.00000000000275   969-1040   B3 DNA binding domain  
OBART02G24860.1   3.66e-17   73-140   B3 DNA binding domain  
OBART02G28100.1   5.36e-29   92-200   B3 DNA binding domain  
OBART02G28110.1   0.0000000000837   92-145   B3 DNA binding domain  
OBART02G33670.1   4.97e-17   1128-1200   B3 DNA binding domain  
OBART02G33670.2   4.84e-17   1099-1171   B3 DNA binding domain  
OBART03G01650.1   6.67e-29   34-125   B3 DNA binding domain  
OBART03G06210.1   4.12e-24   130-227   B3 DNA binding domain  
OBART03G08090.1   5.3e-16   115-206   B3 DNA binding domain  
  0.0000000000147   13-89   B3 DNA binding domain  
OBART03G25130.1   4.19e-25   29-133   B3 DNA binding domain  
OBART03G26230.1   9.61e-23   22-121   B3 DNA binding domain  
  1.96e-22   1259-1357   B3 DNA binding domain  
  1.51e-19   727-825   B3 DNA binding domain  
  5.69e-18   202-308   B3 DNA binding domain  
  7.85e-18   927-1031   B3 DNA binding domain  
  3.27e-17   400-497   B3 DNA binding domain  
  0.00000000000000157   1144-1234   B3 DNA binding domain  
  0.00000000000000432   1482-1587   B3 DNA binding domain  
OBART03G26240.1   8.63e-24   242-335   B3 DNA binding domain  
  1.49e-20   25-123   B3 DNA binding domain  
  4.51e-19   409-516   B3 DNA binding domain  
OBART03G26260.1   2.35e-22   89-189   B3 DNA binding domain  
  8.76e-20   292-393   B3 DNA binding domain  
  8.37e-19   501-600   B3 DNA binding domain  
OBART03G26320.1   4.32e-25   18-116   B3 DNA binding domain  
  1.37e-23   314-412   B3 DNA binding domain  
  5.69e-22   617-716   B3 DNA binding domain  
  6.93e-22   205-295   B3 DNA binding domain  
  4.05e-18   818-916   B3 DNA binding domain  
  0.00000000000000314   501-593   B3 DNA binding domain  
OBART03G26340.1   2.75e-21   69-172   B3 DNA binding domain  
OBART03G26350.1   3.53e-23   28-128   B3 DNA binding domain  
  0.000000000000179   247-340   B3 DNA binding domain  
OBART03G26360.1   2.55e-21   30-129   B3 DNA binding domain  
  0.00000000000000139   252-342   B3 DNA binding domain  
OBART04G07410.1   0.0000000000001   214-291   B3 DNA binding domain  
OBART04G07410.2   0.0000000000000942   209-286   B3 DNA binding domain  
OBART04G07410.3   0.0000000000000471   133-219   B3 DNA binding domain  
OBART04G07410.4   0.0000000000000824   182-259   B3 DNA binding domain  
OBART04G07410.5   0.0000000000000392   106-192   B3 DNA binding domain  
OBART04G07410.6   0.0000000000000706   97-174   B3 DNA binding domain  
OBART04G08270.1   2.16e-17   39-121   B3 DNA binding domain  
  0.0000000000000133   201-310   B3 DNA binding domain  
OBART04G10000.1   0.0000000000451   173-250   B3 DNA binding domain  
OBART04G10000.2   0.0000000000412   159-236   B3 DNA binding domain  
OBART04G10000.3   0.00000000000961   123-207   B3 DNA binding domain  
OBART04G10000.4   0.0000000000049   98-184   B3 DNA binding domain  
OBART04G10380.1   0.00000000000000275   72-171   B3 DNA binding domain  
OBART04G18910.1   9.55e-29   118-227   B3 DNA binding domain  
OBART04G21030.1   0.000000000124   57-146   B3 DNA binding domain  
OBART04G22880.1   6.41e-29   107-198   B3 DNA binding domain  
OBART04G28590.1   4.84e-40   133-238   B3 DNA binding domain  
OBART04G29160.1   8.11e-48   138-282   B3 DNA binding domain  
OBART04G29160.2   7.72e-48   138-282   B3 DNA binding domain  
OBART04G29550.1   1.1e-18   296-393   B3 DNA binding domain  
OBART04G29560.1   2.55e-18   421-517   B3 DNA binding domain  
OBART04G29560.2   1.15e-18   279-375   B3 DNA binding domain  
OBART04G30660.1   2.09e-26   110-230   B3 DNA binding domain  
OBART05G08120.1   0.00000275   271-371   B3 DNA binding domain  
OBART05G08420.1   0.00000216   271-333   B3 DNA binding domain  
OBART05G20480.1   1.67e-24   132-228   B3 DNA binding domain  
OBART05G22670.1   1.23e-42   147-296   B3 DNA binding domain  
OBART05G25790.1   2.09e-43   93-214   B3 DNA binding domain  
OBART05G25790.2   2.49e-43   93-215   B3 DNA binding domain  
OBART05G25790.3   2.35e-43   93-215   B3 DNA binding domain  
OBART05G25790.4   2.22e-43   93-214   B3 DNA binding domain  
OBART05G25790.5   2.35e-43   93-215   B3 DNA binding domain  
OBART06G00800.1   2.55e-17   299-399   B3 DNA binding domain  
OBART06G06150.1   2.49e-44   117-256   B3 DNA binding domain  
OBART06G14580.2   0.0000196   81-156   B3 DNA binding domain  
OBART06G21450.1   0.00000922   77-118   B3 DNA binding domain  
OBART06G21860.1   3.53e-17   139-243   B3 DNA binding domain  
  0.000000000000194   315-408   B3 DNA binding domain  
  0.0000000000334   12-124   B3 DNA binding domain  
OBART06G24660.1   2.62e-48   119-263   B3 DNA binding domain  
OBART06G25230.1   1.16e-28   124-230   B3 DNA binding domain  
OBART06G26550.1   3.27e-43   143-283   B3 DNA binding domain  
OBART07G05350.1   9.42e-16   430-537   B3 DNA binding domain  
  0.0000000000000209   114-230   B3 DNA binding domain  
OBART07G05360.1   1.29e-16   488-588   B3 DNA binding domain  
  1.29e-16   1185-1285   B3 DNA binding domain  
  9.94e-16   111-220   B3 DNA binding domain  
  0.0000000687   858-928   B3 DNA binding domain  
OBART07G05360.3   0.0000000000196   116-225   B3 DNA binding domain  
OBART07G05400.1   7.59e-19   375-476   B3 DNA binding domain  
  7.59e-19   774-875   B3 DNA binding domain  
OBART07G07940.1   0.000000000000235   8-92   B3 DNA binding domain  
OBART07G09910.1   5.36e-29   148-243   B3 DNA binding domain  
OBART07G18780.1   2.22e-19   342-444   B3 DNA binding domain  
OBART07G18780.2   2.09e-19   342-444   B3 DNA binding domain  
OBART07G26400.1   2.88e-21   360-463   B3 DNA binding domain  
OBART07G26400.2   3.01e-21   360-463   B3 DNA binding domain  
OBART08G00060.1   4.19e-16   205-293   B3 DNA binding domain  
OBART08G00060.2   5.49e-16   252-340   B3 DNA binding domain  
OBART08G03440.1   0.0000000017   68-118   B3 DNA binding domain  
OBART08G08950.1   0.00000000569   243-294   B3 DNA binding domain  
OBART08G08990.1   0.0000018   120-165   B3 DNA binding domain  
OBART08G10540.1   7.06e-21   49-143   B3 DNA binding domain  
  0.00000000000000824   315-414   B3 DNA binding domain  
OBART08G10540.2   7.65e-21   49-143   B3 DNA binding domain  
  0.00000000000000883   333-432   B3 DNA binding domain  
OBART08G10540.3   6.28e-21   20-114   B3 DNA binding domain  
  0.00000000000000726   286-385   B3 DNA binding domain  
OBART08G10540.4   6.87e-21   20-114   B3 DNA binding domain  
  0.00000000000000785   304-403   B3 DNA binding domain  
OBART08G10570.1   0.00000000000012   74-144   B3 DNA binding domain  
OBART08G10580.1   6.87e-20   12-105   B3 DNA binding domain  
  8.04e-19   441-540   B3 DNA binding domain  
  0.00000000216   226-329   B3 DNA binding domain  
OBART08G20780.1   4.84e-42   122-261   B3 DNA binding domain  
OBART08G20780.2   4.71e-42   89-228   B3 DNA binding domain  
OBART10G05670.1   0.0000000000746   6-65   B3 DNA binding domain  
OBART10G13410.1   1.96e-29   119-232   B3 DNA binding domain  
OBART10G17010.1   1.7e-28   32-136   B3 DNA binding domain  
OBART11G03590.1   9.03e-30   35-130   B3 DNA binding domain  
OBART11G05830.1   1.57e-25   281-381   B3 DNA binding domain  
  2.75e-22   23-119   B3 DNA binding domain  
OBART11G15270.1   1.37e-40   143-277   B3 DNA binding domain  
OBART11G16060.1   0.0000000000000049   226-320   B3 DNA binding domain  
  0.00000000000275   369-465   B3 DNA binding domain  
OBART11G16060.2   0.0000000000000294   183-282   B3 DNA binding domain  
  0.00000000000235   331-427   B3 DNA binding domain  
OBART11G16060.3   0.00000000000000334   159-254   B3 DNA binding domain  
  0.00000000000216   303-399   B3 DNA binding domain  
OBART11G16060.4   0.00000000000000334   166-261   B3 DNA binding domain  
  0.00000000000216   310-406   B3 DNA binding domain  
OBART11G16060.7   0.00000000000000131   9-104   B3 DNA binding domain  
  0.000000000000863   153-249   B3 DNA binding domain  
OBART11G16060.8   0.0000000000000019   7-98   B3 DNA binding domain  
  0.000000000000824   147-243   B3 DNA binding domain  
OBART11G18640.1   0.0000000128   4-59   B3 DNA binding domain  
OBART11G20210.1   0.0000000104   246-311   B3 DNA binding domain  
OBART12G03490.1   1.19e-30   33-127   B3 DNA binding domain  
OBART12G07990.1   0.00000000275   62-131   B3 DNA binding domain  
OBART12G08000.1   0.00000000392   62-131   B3 DNA binding domain  
OBART12G11990.1   3.14e-41   109-245   B3 DNA binding domain  
OBART12G17530.1   3.53e-22   721-819   B3 DNA binding domain  
  6.87e-21   234-334   B3 DNA binding domain  
  6.47e-20   1422-1523   B3 DNA binding domain  
  3.53e-18   593-699   B3 DNA binding domain  
  9.42e-18   1081-1186   B3 DNA binding domain  
  1.84e-17   930-1029   B3 DNA binding domain  
  3.92e-17   1202-1305   B3 DNA binding domain  
  5.49e-16   98-188   B3 DNA binding domain  
  0.00000000000000883   442-546   B3 DNA binding domain  
OBART12G17560.1   2.55e-18   253-356   B3 DNA binding domain  
  3.34e-17   21-124   B3 DNA binding domain  
OBART12G18720.1   7.06e-49   117-261   B3 DNA binding domain  
 
Weak hits:
OBART05G08290.1   0.0188   306-355   B3 DNA binding domain  
OBART06G14580.1   0.000196   108-169   B3 DNA binding domain  
OBART07G24760.1   0.0824   58-98   Type II restriction endonuclease effector domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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